Pyro-Velocity
𝒫robabilistic modeling of RNA velocity ⬱
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Pyro-Velocity is a library for probabilistic inference in minimal models approximating gene expression dynamics from, possibly multimodal, single-cell sequencing data. It provides posterior estimates of gene expression parameters, predictive estimates of gene expression states, and local estimates of cell state transition probabilities. It can be used as a component in frameworks that attempt to retain the ability to propagate uncertainty in predicting: distributions over cell fates from subpopulations of cell states, response to cell state perturbations, or candidate genes or gene modules that correlate with determination of specific cell fates.
Documentation 📒
Please see the Documentation.
Changelog 🔀
Changes for each release are listed in the Changelog.
Contributing ✨
Please review the Contributing Guide for instructions on setting up a development environment and submitting pull requests.
Community 🏘
If you would like to apply Pyro-Velocity in your research, have an idea for a new feature, have a problem using the library, or just want to chat, please feel free to start a discussion.
If you have a feature request or issue using Pyro-Velocity that may require making changes to the contents of this repository, please file an issue containing
- a GitHub permananent link to the location in the repository you think is causing a problem or will require changes, and
- provide a minimal reproducible example of the problem or proposed improvement.
We are always interested in discussions and issues that can help to improve the Documentation.
License ⚖️
3 maintainers
Release files for pyrovelocity 0.4.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
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| pyrovelocity-0.4.5.tar.gz | 1.1 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| pyrovelocity-0.4.5-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 2.2 MB
Release files / pyrovelocity-0.4.5.tar.gz
| Download URL | pyrovelocity-0.4.5.tar.gz |
|---|---|
| Size | 1.1 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Transparency logRelease files / pyrovelocity-0.4.5-py3-none-any.whl
| Download URL | pyrovelocity-0.4.5-py3-none-any.whl |
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| Size | 1.1 MB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
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