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PySEGUL

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PySEGUL is a python bindings of the SEGUL high-performance and memory-efficient phylogenomic tools. It is well-suited for large-scale phylogenomic projects involving thousands of loci, but it is just as capable of handling small Sanger sequences effectively.

Learn more on using PySEGUL in the documentation.

Quick Start

pip install pysegul

To concatenate alignments:

import pysegul

def concat_alignments():
    input_dir = 'tests/concat'
    input_format = 'nexus'
    datatype = 'dna'
    output_format = 'fasta'
    partition_format = 'raxml'
    prefix = 'concatenated'
    output_dir = 'results/concat'
    concat = pysegul.AlignmentConcatenation(
        input_format,  
        datatype, 
        output_dir, 
        output_format, 
        partition_format, 
        prefix
        )
    concat.from_dir(input_dir)

if __name__ == '__main__':
    concat_alignments()

Metadata

Release files for pysegul 0.4.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for pysegul 0.4.1
File Size Uploaded Provenance
pysegul-0.4.1.tar.gz 26.0 kB Without provenance Details

Built distributions (wheels)

Table of built distributions (wheels) for pysegul 0.4.1
File
pysegul-0.4.1-pp310-pypy310_pp73-musllinux_1_2_x86_64.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-pp310-pypy310_pp73-musllinux_1_2_i686.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-pp310-pypy310_pp73-musllinux_1_2_armv7l.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-pp310-pypy310_pp73-musllinux_1_2_aarch64.whl PyPy 3.10 PyPy 3.10 7.3 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_i686.manylinux2014_i686.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-pp310-pypy310_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.10 PyPy 3.10 7.3 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-pp39-pypy39_pp73-musllinux_1_2_x86_64.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-pp39-pypy39_pp73-musllinux_1_2_i686.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-pp39-pypy39_pp73-musllinux_1_2_armv7l.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-pp39-pypy39_pp73-musllinux_1_2_aarch64.whl PyPy 3.9 PyPy 3.9 7.3 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_i686.manylinux2014_i686.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.9 PyPy 3.9 7.3 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-pp38-pypy38_pp73-musllinux_1_2_x86_64.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-pp38-pypy38_pp73-musllinux_1_2_i686.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-pp38-pypy38_pp73-musllinux_1_2_armv7l.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-pp38-pypy38_pp73-musllinux_1_2_aarch64.whl PyPy 3.8 PyPy 3.8 7.3 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_i686.manylinux2014_i686.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl PyPy 3.8 PyPy 3.8 7.3 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-cp312-none-win_amd64.whl CPython 3.12 none Windows x86-64 Details
pysegul-0.4.1-cp312-none-win32.whl CPython 3.12 none Windows x86-32 Details
pysegul-0.4.1-cp312-cp312-musllinux_1_2_x86_64.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-cp312-cp312-musllinux_1_2_i686.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-cp312-cp312-musllinux_1_2_armv7l.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-cp312-cp312-musllinux_1_2_aarch64.whl CPython 3.12 CPython 3.12 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.12 CPython 3.12 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-cp312-cp312-macosx_11_0_arm64.whl CPython 3.12 CPython 3.12 macOS 11.0+ ARM64 Details
pysegul-0.4.1-cp312-cp312-macosx_10_12_x86_64.whl CPython 3.12 CPython 3.12 macOS 10.12+ x86-64 Details
pysegul-0.4.1-cp311-none-win_amd64.whl CPython 3.11 none Windows x86-64 Details
pysegul-0.4.1-cp311-none-win32.whl CPython 3.11 none Windows x86-32 Details
pysegul-0.4.1-cp311-cp311-musllinux_1_2_x86_64.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-cp311-cp311-musllinux_1_2_i686.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-cp311-cp311-musllinux_1_2_armv7l.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-cp311-cp311-musllinux_1_2_aarch64.whl CPython 3.11 CPython 3.11 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.11 CPython 3.11 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-cp311-cp311-macosx_11_0_arm64.whl CPython 3.11 CPython 3.11 macOS 11.0+ ARM64 Details
pysegul-0.4.1-cp311-cp311-macosx_10_12_x86_64.whl CPython 3.11 CPython 3.11 macOS 10.12+ x86-64 Details
pysegul-0.4.1-cp310-none-win_amd64.whl CPython 3.10 none Windows x86-64 Details
pysegul-0.4.1-cp310-none-win32.whl CPython 3.10 none Windows x86-32 Details
pysegul-0.4.1-cp310-cp310-musllinux_1_2_x86_64.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-cp310-cp310-musllinux_1_2_i686.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-cp310-cp310-musllinux_1_2_armv7l.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-cp310-cp310-musllinux_1_2_aarch64.whl CPython 3.10 CPython 3.10 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.10 CPython 3.10 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-cp310-cp310-macosx_11_0_arm64.whl CPython 3.10 CPython 3.10 macOS 11.0+ ARM64 Details
pysegul-0.4.1-cp39-none-win_amd64.whl CPython 3.9 none Windows x86-64 Details
pysegul-0.4.1-cp39-none-win32.whl CPython 3.9 none Windows x86-32 Details
pysegul-0.4.1-cp39-cp39-musllinux_1_2_x86_64.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-cp39-cp39-musllinux_1_2_i686.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-cp39-cp39-musllinux_1_2_armv7l.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-cp39-cp39-musllinux_1_2_aarch64.whl CPython 3.9 CPython 3.9 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.9 CPython 3.9 Linux glibc 2.17+ ARM64 Details
pysegul-0.4.1-cp39-cp39-macosx_11_0_arm64.whl CPython 3.9 CPython 3.9 macOS 11.0+ ARM64 Details
pysegul-0.4.1-cp38-none-win_amd64.whl CPython 3.8 none Windows x86-64 Details
pysegul-0.4.1-cp38-none-win32.whl CPython 3.8 none Windows x86-32 Details
pysegul-0.4.1-cp38-cp38-musllinux_1_2_x86_64.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ x86-64 Details
pysegul-0.4.1-cp38-cp38-musllinux_1_2_i686.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ x86-32 Details
pysegul-0.4.1-cp38-cp38-musllinux_1_2_armv7l.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ ARMv7l Details
pysegul-0.4.1-cp38-cp38-musllinux_1_2_aarch64.whl CPython 3.8 CPython 3.8 Linux musl 1.2+ ARM64 Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ x86-64 Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_s390x.manylinux2014_s390x.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ IBM System/390x Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ PowerPC 64-le Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ x86-32 Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_armv7l.manylinux2014_armv7l.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ ARMv7l Details
pysegul-0.4.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl CPython 3.8 CPython 3.8 Linux glibc 2.17+ ARM64 Details

Total release size: 183.9 MB

Release files / pysegul-0.4.1.tar.gz

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