pySeqLib: A small python library to process sequencing data.
Project description
A small python library to process sequencing data. It is under active development.
What’s inside?
intronX: a program to fetch sequence related features for introns: 1) length, 2) splice site motif strength, 3) second structure energy 4) frequecy of k-mers. See manual and example.
pymfold: a python wrap of mfold for calculate energy of RNA secondary structure.
motif-score: a motif score calculate
a sequence mapper to find lariat in RNA-seq reads (under test)
a sam file resampling method
How to install?
Download the codes from this github repository and then run the following command line:
python setup.py install
If you don’t have the root permission, add --user.
Rquired libraries: pysam, numpy, Cython.
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