pyspoa
Python bindings to spoa.
Installation
$ pip install pyspoa
Usage
>>> from spoa import poa
>>>
>>> consensus, msa = poa(['AACTTATA', 'AACTTATG', 'AACTATA'])
>>> consensus
'AACTTATA'
>>> msa
['AACTTATA-', 'AACTTAT-G', 'AAC-TATA-']
>>> print(os.linesep.join(msa))
AACTTATA-
AACTTAT-G
AAC-TATA-
Developer Quick Start
$ git clone --recursive https://github.com/nanoporetech/pyspoa.git
$ cd pyspoa
$ python3 -m venv pyspoa
$ source pyspoa/bin/activate
(pyspoa) $ make build
Licence and Copyright
(c) 2019 Oxford Nanopore Technologies Ltd.
pyspoa is distributed under the terms of the MIT License. If a copy of the License was not distributed with this file, You can obtain one at https://github.com/nanoporetech/pyspoa
Research Release
Research releases are provided as technology demonstrators to provide early access to features or stimulate Community development of tools. Support for this software will be minimal and is only provided directly by the developers. Feature requests, improvements, and discussions are welcome and can be implemented by forking and pull requests. However much as we would like to rectify every issue and piece of feedback users may have, the developers may have limited resource for support of this software. Research releases may be unstable and subject to rapid iteration by Oxford Nanopore Technologies.
2 maintainers
Metadata
2 maintainers
Release files for pyspoa 0.3.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pyspoa-0.3.2.tar.gz | 53.6 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| pyspoa-0.3.2-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 | Details |
| pyspoa-0.3.2-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl | CPython 3.14 | CPython 3.14 | Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| pyspoa-0.3.2-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 | Details |
| pyspoa-0.3.2-cp313-cp313-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ ARM64, Linux glibc 2.24+ ARM64 | Details |
| pyspoa-0.3.2-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 | Details |
| pyspoa-0.3.2-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| pyspoa-0.3.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 | Details |
| pyspoa-0.3.2-cp311-cp311-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| pyspoa-0.3.2-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 | Details |
| pyspoa-0.3.2-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.24+ ARM64, Linux glibc 2.28+ ARM64 | Details |
| pyspoa-0.3.2-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.17+ ARM64 | Details |
Total release size: 12.1 MB
Release files / pyspoa-0.3.2.tar.gz
| Download URL | pyspoa-0.3.2.tar.gz |
|---|---|
| Size | 53.6 kB |
| Tags | Source |
|
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No |
| Uploaded via |
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|
Release files / pyspoa-0.3.2-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | pyspoa-0.3.2-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.14 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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| Uploaded via |
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Release files / pyspoa-0.3.2-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyspoa-0.3.2-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.14 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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No |
| Uploaded via |
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|
Release files / pyspoa-0.3.2-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | pyspoa-0.3.2-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.13 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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No |
| Uploaded via |
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|
Release files / pyspoa-0.3.2-cp313-cp313-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyspoa-0.3.2-cp313-cp313-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.13 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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| Uploaded via |
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|
Release files / pyspoa-0.3.2-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | pyspoa-0.3.2-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.12 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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| Uploaded via |
twine/6.2.0 CPython/3.12.3
|
Release files / pyspoa-0.3.2-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyspoa-0.3.2-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.12 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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Release files / pyspoa-0.3.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | pyspoa-0.3.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.11 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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| Uploaded via |
twine/6.2.0 CPython/3.12.3
|
Release files / pyspoa-0.3.2-cp311-cp311-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyspoa-0.3.2-cp311-cp311-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.11 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
twine/6.2.0 CPython/3.12.3
|
Release files / pyspoa-0.3.2-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | pyspoa-0.3.2-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.10 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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| Uploaded via |
twine/6.2.0 CPython/3.12.3
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Release files / pyspoa-0.3.2-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl
| Download URL | pyspoa-0.3.2-cp310-cp310-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.10 Linux glibc 2.24+ ARM64 Linux glibc 2.28+ ARM64 |
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| Uploaded via |
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|
Release files / pyspoa-0.3.2-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl
| Download URL | pyspoa-0.3.2-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl |
|---|---|
| Size | 1.1 MB |
| Tags | CPython 3.10 Linux glibc 2.17+ ARM64 |
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| Uploaded via |
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