pytest-notebook-policy 1.0.2

Pytest plugin for notebook policy and quality checks

pytest-notebook-policy

pytest-notebook-policy is a pytest plugin that enforces notebook policy and quality rules.

It focuses on notebook-specific checks for marimo and Jupyter workflows, not generic Python linting.

Terminology and discoverability

If you are looking for notebook best practices, assurance, validation, or testing tooling, this project is intended to cover those needs through enforceable policy checks and automated quality gates.

What this package is

pytest-notebook-policy is a lightweight semantic checker for notebook workflows.

It focuses on enforcing notebook patterns that are easy to miss in review.

Patterns checked

• on_change callback usage where reactivity is clearer
• cross-cell mutation of shared objects
• non-idempotent cell behaviour
• mixed test/helper cells and fixture placement conventions

Why this package exists

What marimo already covers

• native notebook testing with pytest
• built-in notebook linting via marimo check (announcement)

pytest-notebook-policy is designed to complement those tools with opinionated, team-level checks tailored to a stricter “production notebook” style.

In practice

• use Ruff for general Python quality/security
• use marimo check for core notebook validity and formatting rules
• use pytest-notebook-policy for extra policy checks around reactive design and notebook maintainability

Machine-assisted coding guardrails

pytest-notebook-policy is especially useful as an automated quality gate when notebooks are generated or edited by coding agents (for example Claude, Warp, Codex, or similar tools).

Adding it to prek hooks and CI helps catch marimo-specific issues immediately, so agents can self-correct before code reaches review.

Example prek hook configuration:

repos:
  - repo: local
    hooks:
      - id: pytest-notebook-quality
        name: pytest-notebook-quality
        entry: uv run pytest-notebook-quality experiments notebooks
        language: system
        pass_filenames: false

Feedback loop

• agent proposes notebook edits
• prek/CI runs Ruff + pytest-notebook-policy checks
• agent fixes violations and retries

Current rules

• M001: prefer reactive dependencies over on_change handlers.
• M002: keep test cells focused; avoid mixing tests with helper/setup code in the same cell.
• M003: avoid mutable module-level state in notebook files.
• M004: prefer fixtures in conftest.py or helper modules rather than notebook modules.
• M005: avoid cross-cell mutation of shared objects (including notebook inputs and module-level mutable state).
• M006: avoid non-idempotent calls in cells (for example random.*, np.random.*, time.time, uuid.uuid4).
• J001: avoid notebook magics and shell escapes in policy-checked notebooks.
• J002: avoid non-idempotent calls in Jupyter notebook code cells.
• J010: (opt-in) check that paired .ipynb and .py files stay in sync.
• J011: require a top-of-notebook parameter/configuration cell in the first few code cells.
• J012: keep notebooks and cells small enough to stay reviewable and maintainable.
• J013: avoid excessive inline function/class definitions in notebooks; extract reusable logic into modules. Detailed rationale and remediation guidance: docs/RULES.md.

Usage

Runtime baseline: Python 3.12+. Install in a project:

uv add --dev pytest-notebook-policy

Install prek hooks:

uv run prek install

Run hooks across all files:

uv run prek run --all-files

CI runs on push/PR using .github/workflows/ci.yml and executes Ruff plus the test suite.

Run checks explicitly:

uv run pytest --notebook-check

Enable by default in pyproject.toml:

[tool.pytest.ini_options]
notebook_check = true

Filter rules:

uv run pytest --notebook-check --notebook-check-select M001 --notebook-check-ignore M004

Choose Jupyter rule source:

uv run pytest --notebook-check --notebook-check-jupyter-source paired-py

Set default Jupyter rule source in pyproject.toml:

[tool.pytest.ini_options]
notebook_check = true
notebook_check_jupyter_source = "paired-py"

paired-py prefers the paired .py notebook (when available and readable) for J-rules and falls back to .ipynb.

Tune Jupyter size/complexity thresholds:

uv run pytest --notebook-check \
  --notebook-check-jupyter-max-code-cells 30 \
  --notebook-check-jupyter-max-cell-lines 120 \
  --notebook-check-jupyter-max-inline-definitions 5

Set defaults in pyproject.toml:

[tool.pytest.ini_options]
notebook_check_jupyter_max_code_cells = "30"
notebook_check_jupyter_max_cell_lines = "120"
notebook_check_jupyter_max_inline_definitions = "5"

Run combined Ruff + notebook policy checks:

uv run pytest-notebook-quality path/to/notebooks

Skip Ruff and run only notebook policy checks:

uv run pytest-notebook-quality --skip-ruff path/to/notebooks

Customise deterministic rule toggles and thresholds on the quality command:

uv run pytest-notebook-quality --skip-ruff \
  --notebook-check-select M \
  --notebook-check-select J \
  --notebook-check-ignore J010 \
  --notebook-check-jupyter-source paired-py \
  --notebook-check-jupyter-max-code-cells 30 \
  --notebook-check-jupyter-max-cell-lines 120 \
  --notebook-check-jupyter-max-inline-definitions 5 \
  path/to/notebooks

Write an NBOM-style JSON manifest (notebook surface + dependency correlation):

uv run pytest-notebook-quality --skip-ruff \
  --report-nbom-json reports/notebook-policy-nbom.json \
  --report-dependency-enrichment \
  path/to/notebooks

Include optional vulnerability IDs (queried from OSV) in dependency enrichment output:

uv run pytest-notebook-quality --skip-ruff \
  --report-nbom-json reports/notebook-policy-nbom.json \
  --report-dependency-vulns \
  path/to/notebooks

--report-dependency-vulns implicitly enables dependency enrichment.

Generate a markdown report with findings-first layout, touchpoint summary, and appendices:

uv run pytest-notebook-quality --skip-ruff --report-md reports/notebook-policy-report.md path/to/notebooks

Enable optional dependency enrichment in the report:

uv run pytest-notebook-quality --skip-ruff \
  --report-md reports/notebook-policy-report.md \
  --report-dependency-enrichment \
  path/to/notebooks

Interpret report outputs and tune policy profiles: docs/REPORT_INTERPRETATION.md.

Project-specific quality defaults can be set in pyproject.toml:

[tool.pytest_notebook_policy.quality]
select = ["M", "J"]
ignore = ["J010"]
jupyter_source = "paired-py"
jupyter_max_code_cells = 30
jupyter_max_cell_lines = 120
jupyter_max_inline_definitions = 5
report_md = "reports/notebook-policy-report.md"
report_dependency_enrichment = true
report_dependency_vulns = false
report_nbom_json = "reports/notebook-policy-nbom.json"

Enable optional sync tooling:

uv add --dev 'pytest-notebook-policy[sync]'

Documentation site (Great Docs)

This repository uses Great Docs for documentation generation and deployment.

Build docs locally:

uv run great-docs build

Preview docs locally:

uv run great-docs preview

Scaffold or refresh the GitHub Pages workflow:

uv run great-docs setup-github-pages

Versioning and release workflow

• Versioning follows Semantic Versioning (MAJOR.MINOR.PATCH).
• Release history lives in RELEASE_NOTES.md.

Typical release flow:

uv version --bump patch
uv build
uv run --with twine twine check dist/*

When ready to release (not run yet here), upload with Twine:

uv run --with twine twine upload dist/*

Notebook fixtures for testing

The repository includes notebook fixtures in tests/fixtures:

• tests/fixtures/synthetic: synthetic notebooks for targeted pass/fail checks.
• tests/fixtures/real: real-world notebooks sourced from public repositories (with provenance in tests/fixtures/real/SOURCES.txt).

Refresh pinned real fixtures and print their observed rule-code sets:

uv run python scripts/refresh_real_fixtures.py