PythonPDB

Tools for working with Protein Data Bank Files. This package was created to provide a bridge between python based OOP (like BioPython) and dataframe/pandas style interfaces (like BioPandas).

Key Links

• Source code: https://github.com/benjiemc/PythonPDB
• Documentation: https://benjiemc.github.io/PythonPDB/
• PyPi: https://pypi.org/project/python-pdb/

Installation

The package is available on PyPi and can be downloaded as follows.

pip install python-pdb

Installing for Development

To work on this package, download the git repository...

git clone https://github.com/benjiemc/PythonPDB.git

# or using SSH
git clone git@github.com:benjiemc/PythonPDB.git

cd PythonPDB/

... and then install the package with development dependencies (best practice is to use a virtual environment).

python3 -m venv venv
pip install -e '.[develop]'

Documentation

Documentation can be found at https://benjiemc.github.io/PythonPDB/.