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stk

Toolkit for 3D volume processing

Build

mkdir build && cd build
cmake ..
make

CMake options:

  • STK_BUILD_EXAMPLES: build example programs
  • STK_BUILD_TESTS: build tests
  • STK_USE_CUDA: build with CUDA support
  • STK_WARNINGS_ARE_ERRORS: compilation will fail on warnings
  • STK_BUILD_WITH_DEBUG_INFO: include debug symbols in the binaries
  • STK_ENABLE_FAST_MATH: enable unsafe (non IEEE 754-compliant) optimisations
  • STK_LOGGING_PREFIX_FILE: add the file name as prefix to each log message

When building with STK_USE_CUDA, in case the version of gcc selected by CMake was not compatible with the one required by CUDA, it is possible to specify a different executable with -DCMAKE_CUDA_FLAGS="-ccbin gcc-XX", where gcc-XX is a version of gcc compatible with your CUDA version.

Python API

A minimalistic Python API is also provided.

Install

Requires the Python development headers (e.g. python3-dev or python3-devel).

python -m pip install -e .

Wheels for multiple Python versions are built with cibuildwheel, which requires Docker or Podman:

pipx run cibuildwheel --platform linux

Example usage

import stk
import numpy as np

# Create volume directly from numpy
vol = stk.Volume(np.zeros((5,5,5)).astype(np.float32), spacing=(2,2,2))
# or read volume from file
vol = stk.read_volume('test.nrrd')

# Modify data (numpy array points to the volume data)
data = np.array(vol, copy=False)
data[0:10] = 0.0

# Access meta data
vol.origin = (2, 2, 2)
vol.spacing = (3, 3, 3)

# Write volume
stk.write_volume('test-out.nrrd', vol)

Metadata

Release files for python-stk 0.5

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for python-stk 0.5
File Size Uploaded
python_stk-0.5.tar.gz 3.3 MB Details

Built distributions (wheels)

Table of built distributions (wheels) for python-stk 0.5
File
python_stk-0.5-cp315-cp315-win_amd64.whl CPython 3.15 CPython 3.15 Windows x86-64 Details
python_stk-0.5-cp315-cp315-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.15 CPython 3.15 Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 Details
python_stk-0.5-cp315-cp315-macosx_15_0_x86_64.whl CPython 3.15 CPython 3.15 macOS 15.0+ x86-64 Details
python_stk-0.5-cp315-cp315-macosx_15_0_arm64.whl CPython 3.15 CPython 3.15 macOS 15.0+ ARM64 Details
python_stk-0.5-cp314-cp314-win_amd64.whl CPython 3.14 CPython 3.14 Windows x86-64 Details
python_stk-0.5-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.14 CPython 3.14 Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 Details
python_stk-0.5-cp314-cp314-macosx_15_0_x86_64.whl CPython 3.14 CPython 3.14 macOS 15.0+ x86-64 Details
python_stk-0.5-cp314-cp314-macosx_15_0_arm64.whl CPython 3.14 CPython 3.14 macOS 15.0+ ARM64 Details
python_stk-0.5-cp313-cp313-win_amd64.whl CPython 3.13 CPython 3.13 Windows x86-64 Details
python_stk-0.5-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.13 CPython 3.13 Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 Details
python_stk-0.5-cp313-cp313-macosx_15_0_x86_64.whl CPython 3.13 CPython 3.13 macOS 15.0+ x86-64 Details
python_stk-0.5-cp313-cp313-macosx_15_0_arm64.whl CPython 3.13 CPython 3.13 macOS 15.0+ ARM64 Details
python_stk-0.5-cp312-cp312-win_amd64.whl CPython 3.12 CPython 3.12 Windows x86-64 Details
python_stk-0.5-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.12 CPython 3.12 Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 Details
python_stk-0.5-cp312-cp312-macosx_15_0_x86_64.whl CPython 3.12 CPython 3.12 macOS 15.0+ x86-64 Details
python_stk-0.5-cp312-cp312-macosx_15_0_arm64.whl CPython 3.12 CPython 3.12 macOS 15.0+ ARM64 Details
python_stk-0.5-cp311-cp311-win_amd64.whl CPython 3.11 CPython 3.11 Windows x86-64 Details
python_stk-0.5-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.11 CPython 3.11 Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 Details
python_stk-0.5-cp311-cp311-macosx_15_0_x86_64.whl CPython 3.11 CPython 3.11 macOS 15.0+ x86-64 Details
python_stk-0.5-cp311-cp311-macosx_15_0_arm64.whl CPython 3.11 CPython 3.11 macOS 15.0+ ARM64 Details
python_stk-0.5-cp310-cp310-win_amd64.whl CPython 3.10 CPython 3.10 Windows x86-64 Details
python_stk-0.5-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl CPython 3.10 CPython 3.10 Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 Details
python_stk-0.5-cp310-cp310-macosx_15_0_x86_64.whl CPython 3.10 CPython 3.10 macOS 15.0+ x86-64 Details
python_stk-0.5-cp310-cp310-macosx_15_0_arm64.whl CPython 3.10 CPython 3.10 macOS 15.0+ ARM64 Details

Total release size: 15.9 MB

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0.5 This release

25 release files

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12 release files

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