pyvital 0.5.0

Python Libray for Biosignal Analysis

pyvital

Open source Python library for biosignal analysis. Provides signal processing utilities and medical algorithm implementations for vital signs data.

Installation

pip install pyvital

Core Functions

The pyvital package provides signal processing utilities directly at the package level:

import pyvital

# Interpolate NaN values
data = pyvital.interp_undefined(raw_data)

# QRS detection (Pan-Tompkins algorithm)
r_peaks = pyvital.detect_qrs(ecg_data, srate=500)

# Blood pressure / pleth peak detection
minlist, maxlist = pyvital.detect_peaks(abp_data, srate=100)

# Bandpass filter
filtered = pyvital.band_pass(data, srate=500, fl=5, fh=15)

# Resampling
resampled = pyvital.resample_hz(data, srate_from=500, srate_to=100)

Filters

Each filter module implements a run(inp, opt, cfg) function and a cfg dict describing its inputs, outputs, and parameters.

Module	Description
abp_hpi	Hypotension Prediction Index from arterial blood pressure
abp_ppv	Pulse Pressure Variation from arterial blood pressure
ecg_annotator	ECG waveform annotation using wavelets
ecg_beat_noise_detector	Beat/noise classification using deep learning
ecg_classifier	ECG rhythm and beat classification
ecg_hrv	Heart Rate Variability analysis
ecg_mtwa	Microvolt T-Wave Alternans detection
ecg_qrs_detector	R-peak detection
eeg_fft	EEG frequency analysis (band powers, SEF, MF)
nirs_cox	Cerebral oximetry autoregulation index (COx)
pkpd_3comp	Pharmacokinetic 3-compartment model
pleth_dpop	Delta POP from plethysmography
pleth_ptt	Pulse Transit Time
pleth_pvi	Pleth Variability Index
pleth_spi	Surgical Pleth Index
resp_compliance	Respiratory compliance
sv_dlapco	Stroke volume estimation (DLAPCO)

Filter Server

pyvital includes a built-in HTTP server (Sanic) that exposes filters as REST endpoints:

python -m pyvital [filter_folder] [port]

• GET / returns the list of available filters and their configurations.
• POST /<module_name> runs a filter with gzip-compressed JSON input.

License

MIT