pywarper

PyPI version

pywarper is a Python package for conformal mapping-based warping of retinal morphologies, based on the MATLAB implementations (Sümbül, et al. 2014).

Installation

To install the latest tagged version:

pip install pywarper

Or to install the development version, clone the repository and install it with pip install -e:

git clone https://github.com/berenslab/pywarper.git
pip install -e pywarper

By default, pywarper uses scipy.sparse.linalg.spsolve to solve sparse matrices, which can be slow. For better performance, you can manually install the additional dependencies of scikit-sparse first:

# mac
brew install suite-sparse

# debian
sudo apt-get install libsuitesparse-dev

then:

pip install pywarper[scikit-sparse]

Usage

See example notebooks for usage.

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (0.2.8)

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for berenslab from gravatar.com berenslab

License expression

GPL-3.0-or-later
View SPDX License List

Requires

Python >=3.10.0

Provides Extra

dev scikit-sparse

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

pywarper-0.2.7.tar.gz (1.7 MB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

pywarper-0.2.7-py3-none-any.whl (45.5 kB view details)

Uploaded Python 3

File details

Details for the file pywarper-0.2.7.tar.gz.

File metadata

  • Download URL: pywarper-0.2.7.tar.gz
  • Upload date:
  • Size: 1.7 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.13.14

File hashes

Hashes for pywarper-0.2.7.tar.gz
Algorithm Hash digest
SHA256 da8104de7efaa190e176408625f1fd05ee70179b9b340d418ea693a2ddf3458a
MD5 cb589f153bf08749751e0fba85143a35
BLAKE2b-256 c43d8f8073cee4340bcb4e0b0ac7598732960f384a351e9918477dfbbd8beb11

See more details on using hashes here.

Provenance

The following attestation bundles were made for pywarper-0.2.7.tar.gz:

Publisher: python-publish.yml on berenslab/pywarper

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file pywarper-0.2.7-py3-none-any.whl.

File metadata

  • Download URL: pywarper-0.2.7-py3-none-any.whl
  • Upload date:
  • Size: 45.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.13.14

File hashes

Hashes for pywarper-0.2.7-py3-none-any.whl
Algorithm Hash digest
SHA256 e046774e5fb77e0c997d611c7d50e491da5a1d51091d2cc8ec520c9b43a07dda
MD5 b95c40de67cb499050efa896a1d780db
BLAKE2b-256 a98f65fe7799611d6e3fa496b25fdbf71ab1836d24f9311b9a62447742df870e

See more details on using hashes here.

Provenance

The following attestation bundles were made for pywarper-0.2.7-py3-none-any.whl:

Publisher: python-publish.yml on berenslab/pywarper

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Release history Release notifications | RSS feed

0.2.8

2 files

This release

0.2.7 This release

2 files

0.2.6

2 files

0.2.5

2 files

0.2.4

2 files

0.2.3

2 files

0.2.2

2 files

0.2.1

2 files

0.2.0

2 files

0.1.10

2 files

0.1.9

2 files

0.1.8

2 files

0.1.7

2 files

0.1.6

2 files

0.1.5

2 files

0.1.4

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page