pywup 0.0.10

A small set of tools

pywup

A small set of tools.

TODO: Expand this markdown

How to install / update

pip3 install --upgrade pywup --user --no-cache-dir

If you cannot run the wup command after installation, check if the path to the folder .local/bin is in your PATH. If not, add the following to the end of your ~/.bashrc:

export PATH=/home/<YOUR_USERNAME>/.local/bin:$PATH

The library

configure

This is a python library for creating template-based configure scripts.

#!/usr/bin/env python3

from pywup.configure import *

mf = TemplateBuilder()

mf.compiler     = find_program_or_abort(["clang++", "g++"], "Compiler", "clang")
mf.python       = find_header_or_abort("m/Python.h", "Python header", "python3-dev")
mf.highgui      = find_header_or_abort("/highgui.hpp", "Opencv's highgui", "opencv-dev")
mf.imgproc      = find_header_or_abort("/imgproc.hpp", "Opencv's imgproc", "opencv-dev")
mf.valgrind_py  = find_file_or_abort("python3-devel/valgrind-python.supp", "valgrind suppression file for python3", "python3-dev")
mf.libimgcodecs = find_lib("libopencv_imgcodecs.so", "libopencv_imgcodecs")

mf.libs         = "-lopencv_core -lopencv_highgui -lopencv_imgproc -I../../wup/cpp/include"
mf.headers      = "-DPYTHON_H=$(PYTHON_H) -DHIGHGUI_H=$(HIGHGUI_H) -DIMGPROC_H=$(IMGPROC_H)"

if mf.libimgcodecs:
    mf.libs     += " -lopencv_imgcodecs"

mf.build("Makefile", """\
CC={compiler}
HIGHGUI_H={highgui}
PYTHON_H={python}
IMGPROC_H={imgproc}
VALGRIND_PYTHON={valgrind_py}

LIBS = {libs}
HEADERS= {headers}

all:
	$(CC) -fPIC -shared wup_wrapper.cpp -o libwup.so -Wall -O3 -std=c++11 $(LIBS) $(HEADERS)

run:
	$(CC) main.cpp -o main -Wall -O3 -std=c++11 $(LIBS) $(HEADERS)
	./main

debug:
	$(CC) main.cpp -o main -Wall -g -std=c++11 $(LIBS) $(HEADERS)
	gdb main

valgrind:
	$(CC) -fPIC -shared wup_wrapper.cpp -o libwup.so -Wall -O1 -g -std=c++11 $(LIBS) $(HEADERS)
	valgrind --leak-check=full --show-leak-kinds=all --track-origins=yes --verbose --suppressions=$(VALGRIND_PYTHON) python3 main3.py --model wisard --dataset mnist 2> valgrind.out
""")

wup

This is a command line utility for running experiments, plotting and executing repetitive tasks.

collect

collect runs a program multiple times and collects outputs.

wup collect \
    --p TRAIN_TIME "Info: Time to train was ([-0-9\.e\+]+) μs" \
    --p TEST_TIME "Info: Time to test was ([-0-9\.e\+]+) μs" \
    --p ACC "Test Acc = ([0-9\.]+)" \
    --runs 10 \
    --va THREADS 1 17 2 \
    --vg JOBS 1 80000 1.6 \
    --o wespa.csv \
    --c "./wisard -createModel RamWisard -ramBits 28 -decoder classic -ramType prime \
            -train mnist ../data/emnist/byclass/emnist-byclass-train \
            -test mnist ../data/emnist/byclass/emnist-byclass-test \
            -times -numThreads {} -hashSize 18041 -jobsPerThread {} -bleaching Y -pPredict 2"

heatmap

heatmap receives a csv file and generates a heatmap.

wup heatmap \
    --data ./wespa.csv \
    --y "THREADS" \
    --x "JOBS" \
    --z "TEST_TIME" \
    --tz "data[0,z] / data[i,z]" \
    --tx "\"%d\" % int(float(data[i,x]))" \
    --ty "\"%d\" % int(float(data[i,y]))" \
    --tzz "\"%.2f\" % data[i,j]" \
    --title "Speedup (threads / blockSize)" \
    --size 10 4 \
    --o heatmap_wespa.png

bars

Generates a bar graphic using one or more csv files.

wup bars \
    --load ./note.csv \
    --line THREADS TEST_TIME "note test" \
    --line THREADS TRAIN_TIME "note train" \
 \
    --load ./out.csv \
    --line THREADS TEST_TIME "wespa test" \
    --line THREADS TRAIN_TIME "wespa train"\
 \
    --title "Predict speedups (threads / speedup)" \
    --ty "y[0,0] / y[i,j]" \
    --ts "y[0,0]*s[i,j] / (y[i,j]**2)" \
    --tyy "\"%.2f\" % ty[i,j] if ty[i,j] else ''" \
    --tx "int(float(x[i]))" \
    --xlabel "Threads" \
    --ylabel "Speedup" \
    --barwidth 0.9 \
    --size 10 4 \
    --verbose \
    --o bars_parallelPredictSpeedup.png