pyxelperfect 0.1.10

Collection of python powered image-processing functions

Pyxelpefect: Bioinformatic image-processing in pure Python

Github: http://github.com/sifrimlab/pyxelperfect

Author: [e-mail]

Description

This repository represents a collection of useful functions that are used in all bioinformatic image processing performed by the sifrimlab. It's divided into different modules each with their own theme, and each modules hosts several standalone functions that can be useful in any application.

Setup/Installation

This python package is available from pypi:

pip install pyxelperfect

For tensorflow powered functionality (e.g.: Stardist and cellpose segmentation) install additional requirements:

pip install pyxelperfect[tensor]

Documentation

Under construction

Citation

If you use this repository or any of its modules for your analysis, please cite this github:

 @misc{wouters,
 title={Sifrimlab/pyxelperfect: Collection of image-processing tools for bioinformatic applications},
 url={https://github.com/sifrimlab/pyxelperfect},
 journal={GitHub},
 author={Wouters, David}}