qmri-cli

Command-line interface for qmri quantitative MRI analysis.

Installation

pip install qmri-cli

Quick Start

# Fit ADC map
qmri adc fit dwi.nii.gz --bval dwi.bval --output adc.nii.gz

# With brain mask and quality threshold
qmri adc fit dwi.nii.gz \
    --bval dwi.bval \
    --mask brain.nii.gz \
    --r2-threshold 0.8 \
    --output adc.nii.gz

# T1 mapping from inversion recovery
qmri t1 fit-ir t1w.nii.gz \
    --inversion-times 0.1,0.5,1.0,2.0 \
    --output t1_map.nii.gz

# Get help
qmri --help
qmri adc --help

Commands

Command	Description
`qmri adc fit`	ADC fitting from DWI
`qmri adc calibrate`	B-value calibration
`qmri t1 fit-ir`	T1 mapping (inversion recovery)
`qmri t1 fit-vfa`	T1 mapping (variable flip angle)
`qmri t2 fit`	T2 mapping
`qmri thermometry fit`	MR thermometry

Design

The CLI wraps the core qmri library with a user-friendly interface. It uses Click for argument parsing and Rich for formatted output.

Documentation

Full documentation: https://gold-standard-phantoms.github.io/qmri/cli/

Licence

MIT

Metadata

Release files for qmri-cli 0.1.0

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Table of built distributions (wheels) for qmri-cli 0.1.0
File	Interpreter	ABI	Platform	Reset
qmri_cli-0.1.0-py3-none-any.whl 17.8 kB Jun 17, 2026	Python 3	none	any	Details

Release files / qmri_cli-0.1.0-py3-none-any.whl

Download URL	qmri_cli-0.1.0-py3-none-any.whl
Size	17.8 kB
Tags	Python 3
SHA-256 checksum How to use checksums	`b0036bc2becf7483427cf55a4878e79c2951b38fe364fb97e0aaf9e3824224ba`
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Upload date	Jun 17, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/6.2.0 CPython/3.12.12`

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This release

0.1.0 This release

Jun 17, 2026 1 release file

qmri-cli 0.1.0