Update the FASTQ quality scores from a subsequence FASTQ.
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qualrepair
Update the FASTQ quality scores from a subsequence FASTQ.
pip install qualrepair
Example
Repair the qualities in a sub-sequence FASTQ file from its original FASTQ file.
❯ qualrepair --in-source "r1.fastq.gz" --in-subseq "r1.subseq.fastq.gz"
This tool is primarily used to mitigate an unsolved issue in the splitcode tool.
Development and Testing
See the contributing guide for more information.
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