qualrepair
Update the FASTQ quality scores from a subsequence FASTQ.
pip install qualrepair
Example
Repair the qualities in a sub-sequence FASTQ file from its original FASTQ file.
❯ qualrepair --in-source "r1.fastq.gz" --in-subseq "r1.subseq.fastq.gz"
This tool is primarily used to mitigate an unsolved issue in the splitcode tool.
Development and Testing
See the contributing guide for more information.
1 maintainer
Metadata
1 maintainer
Release files for qualrepair 1.0.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| qualrepair-1.0.0.tar.gz | 36.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| qualrepair-1.0.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 41.5 kB
Release files / qualrepair-1.0.0.tar.gz
| Download URL | qualrepair-1.0.0.tar.gz |
|---|---|
| Size | 36.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
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Transparency logRelease files / qualrepair-1.0.0-py3-none-any.whl
| Download URL | qualrepair-1.0.0-py3-none-any.whl |
|---|---|
| Size | 4.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
BLAKE2b-256 checksum How to use checksums |
bfcf5c97dc70e0dd8cf0b398c8d86745212717d0d4b98c574cbc0df3e7e0d08f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 28, 2025.
Transparency log
