High-performance GW/BSE implementation with PySCF integration
Project description
QuasiX Python Bindings
This directory contains the Python package for QuasiX, providing PyO3 bindings to the high-performance Rust computational kernel.
Structure
quasix/
├── Cargo.toml # Rust/PyO3 configuration
├── pyproject.toml # Python package metadata
├── src/
│ ├── lib.rs # PyO3 module definition
│ └── python.rs # Python-specific wrappers
├── quasix/
│ ├── __init__.py # Python module initialization
│ └── core.py # High-level Python API
└── tests/
└── test_basic.py # Python tests
Building
Development Build
For development, use maturin to build and install the package in development mode:
# Install maturin if not already installed
pip install maturin
# Build and install in development mode
cd quasix
maturin develop --release
# Or for debug mode (faster compilation, slower execution)
maturin develop
Production Build
To build a wheel for distribution:
maturin build --release
The wheel will be created in target/wheels/.
Testing
Run the Python tests:
# Install test dependencies
pip install pytest pytest-cov
# Run tests
pytest tests/
Usage
After building, you can use QuasiX in Python:
from pyscf import gto, scf
from quasix import EvGW, BSE_TDA
# Setup molecule
mol = gto.M(atom='H 0 0 0; F 0 0 1', basis='cc-pvdz')
mf = scf.RHF(mol).run()
# Run evGW
gw = EvGW(mf, auxbasis='cc-pvdz-jkfit')
gw.kernel()
print(f"IP: {gw.get_ionization_potential():.3f} eV")
print(f"EA: {gw.get_electron_affinity():.3f} eV")
# Run BSE for optical excitations
bse = BSE_TDA(gw, nroots=10)
bse.kernel()
print(f"First excitation: {bse.omega[0]:.3f} eV")
Dependencies
Build Dependencies
- Rust (1.70+)
- maturin (1.7+)
- Python (3.10+)
Runtime Dependencies
- numpy (≥1.24.0)
- scipy (≥1.10.0)
- pyscf (≥2.3.0)
- h5py (≥3.8.0)
Optional Dependencies
- matplotlib (for visualization)
- jupyter (for notebooks)
Architecture
The package uses PyO3 to expose Rust functionality to Python:
- Rust Core (
src/): PyO3 bindings that wrap the quasix_core crate - Python API (
quasix/): High-level PySCF-compatible classes - Zero-copy Arrays: NumPy arrays are passed to Rust without copying when possible
- GIL Release: Long computations release the Python GIL for parallelism
Performance Considerations
- The Python layer handles I/O and PySCF integration
- Heavy computation happens in the Rust kernel
- DF tensor construction is optimized for memory efficiency
- Use HDF5 for out-of-core operations with large basis sets
Development Notes
When modifying the PyO3 bindings:
- Update both
lib.rsandpython.rsin thesrc/directory - Ensure proper error handling with PyResult
- Use
py.allow_threads()for GIL release in compute-intensive functions - Maintain PySCF API compatibility in the Python layer
- Add tests for new functionality
License
MIT OR Apache-2.0
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