Python package to query cancer variant databases
Project description
Python package to query cancer variant databases
Free software: MIT license
Documentation: https://querynator.readthedocs.io.
Features
Command-line tool to query the cancergenomeinterpreter via its REST API
Credits
This package uses the cancergenomeinterpreter.org REST API for data retrieval.
Muiños, F., Martínez-Jiménez, F., Pich, O. et al. In silico saturation mutagenesis of cancer genes. Nature 596, 428–432 (2021). https://doi.org/10.1038/s41586-021-03771-1
Tamborero, D. Rubio-Perez, C., Deu-Pons, J. et al., Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations. Genome Medicine 10, (2018). doi: https://doi.org/10.1101/140475
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
Changelog
0.1.1 - Methane Titan (2022-11-18)
Added
Fixed
Github Actions publishing to PyPI
Fix docs
Dependencies
Deprecated
0.1.0 - initial release (2022-11-18)
Added
First release on PyPI
Created the package template with cookiecutter
Functions to query the cancergenomeinterpreter REST API
Fixed
Dependencies
Deprecated
Project details
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