rabe

An implementation of the near-omnigenous, asymptotic bootstrap expressions of Ref. [1].

Summary

In case of the Lorentz collision model, the mono-energetic bootstrap and Ware pinch coefficients, $\bar D_{31}$ and $\bar D_{13}$, can be expressed via a dimensionless geometry parameter $\lambda_{bB}$,

$$ \bar D_{31}=\bar D_{13} = \frac{1}{3} v \rho_L B \lambda_{bB}, \tag{1} $$

scaling out particle velocity $v$, $\rho_L$ and $B$. This parameter can be split into a ''symmetric'' contribution and a ''non-symmetric'' off-set,

$$ \lambda_{bB} = \lambda_\mathrm{sym} + \lambda_\mathrm{off}. \tag{2} $$

For near-omnigenous stellarators at low plasma collisionality $\nu_\ast=\pi R \nu_{\perp}/v$, where $\nu_\perp$ and $R$ are deflection frequency and device major radius, respectively, the off-set can be expressed as

$$ \lambda_{\text{off}} = \frac{\Lambda_\mathrm{A}}{\sqrt{\nu_\ast}} + \frac{\Lambda_\mathrm{B}}{\nu_\ast}, \tag{3} $$

where $\Lambda_\mathrm{A}$ and $\Lambda_\mathrm{B}$ are the geometrical factors due to the variation of the trapped-passing boundary layer width and the misalignment of local maxima, respectively (see Ref. [1]).

Given a VMEC equilibrium file, rabe outputs those geometric coefficients needed to evaluate $\lambda_\mathrm{off}$ at any collisionality. Additionally, it can compute also the coefficients for the ''symmetric'' part

$$ \lambda_\mathrm{sym} = \lambda_{bB}^\mathrm{SC} + \lambda_{bB}^\mathrm{HGM}, \qquad \lambda_{bB}^\mathrm{HGM} = \Lambda_\mathrm{S}\sqrt{\nu_\ast} \tag{4} $$

where the Shaing-Callen asymptotic $\lambda_{bB}^\mathrm{SC}$ is approximated by the perfect omnigenous asymptotic $\lambda_{bB}^\mathrm{SC} \rightarrow \lambda_{bB}^\mathrm{LC}$ obtained by Landreman and Catto [2] and $\lambda_{bB}^\mathrm{HGM}$ is the contribution due to the finite boundary correction derived by Helander, Geiger and Maasberg [3].

Prerequisites

• Fortran compiler (gfortran)
• CMake >= 3.24
• NetCDF-Fortran

On Debian/Ubuntu:

sudo apt-get install gfortran cmake libnetcdf-dev libnetcdff-dev pkg-config

On macOS (Homebrew):

brew install gfortran netcdf-fortran pkg-config
export FC=$(ls $(brew --prefix)/bin/gfortran-* | sort -V | tail -1)
export PKG_CONFIG_PATH=$(brew --prefix)/lib/pkgconfig:$(brew --prefix netcdf-fortran)/lib/pkgconfig

Make sure that FC and PKG_CONFIG_PATH point to your installed gfortran compiler and Netcdf-Fortran package, respectively.

Example

This example walks through a complete run using the QH stellarator equilibrium from Ref. [4], which ships with the repository as a test input. Commands are given for bash shell. While in rabe run

Step 1 — build:

make clean
make CONFIG=Release

This builds the executable rabe.x in Release mode and writes it to build.

Step 2 — create a working directory and link the inputs:

mkdir run_example && cd run_example
ln -s ../test/golden/input/rabe.in .
ln -s ../test/integration/vmec/input/wout_LandremanPaul2021_QH_reactorScale_lowres_reference.nc .

For explanation of the input parameters see the Input / Output section below.

Step 3 — run:

../build/rabe.x

rabe reads rabe.in and field_file from the working directory and writes results to rabe.nc (NetCDF) and rabe.dat (plain text) after completion.

Step 4 — visualize:

python ../test/golden/plot_golden.py rabe.nc

or with Octave:

octave ../test/golden/plot_golden.m rabe.nc

Both produce rabe_output.png showing the off-set factors ($\Lambda_A$, $\Lambda_B$), $\Lambda_\mathrm{S}$, and — if should_calc_shaing_callen = .true. — the Shaing-Callen asymptotic, all plotted against $s_\mathrm{tor}$. The Python script requires matplotlib and xarray. The Octave script requires the netcdf package (pkg install -forge netcdf if not present).

Python interface

In addition to the Fortran executable, rabe ships a Python package with the same name that exposes the core computation through a thin f90wrap binding.

Installation

As a wheel (no compiler required if a matching binary is available):

pip install rabe

Or directly from source (requires the same Fortran and NetCDF prerequisites listed under Prerequisites above):

pip install -e .

Examples

Ready-to-run scripts are in the python/ directory:

Script	Field type	Use case
python/example.py	BoozerField	Real VMEC equilibrium from a .nc file
python/example_fourier.py	FourierField	Analytical Fourier-mode field

BoozerField (boozer_field_t): loads a VMEC NetCDF 3D equilibrium and converts it to Boozer coordinates. This is the same field representation used by the executable.

FourierField (fourier_field_t): builds an 2D field directly from a flat list of Boozer Fourier modes plus surface values for covariant components. Useful for benchmark and optimisation studies.

Both field types are accepted by the main downstream API via FlockOfFieldlines:

from rabe.fieldline_mod import FlockOfFieldlines
flock = FlockOfFieldlines(max_n_fieldlines, iota, field, M_pol, N_tor, nfp)
lambda_a, lambda_b = flock.calc_offset_coefficients(R, dr_dAtheta)
nu_star_crit       = flock.calc_nu_star_crit(R)

Input / Output

rabe reads its configuration from a namelist file rabe.in in the working directory:

&rabe_config
    field_file = "wout_example.nc",      ! VMEC equilibrium file (NetCDF)
    M_pol = -1.0,                        ! poloidal helicity of omnigenity
    N_tor = 4.0,                         ! toroidal helicity of omnigenity
    s_tor = 0.25, 0.5, 0.75,             ! explicit surface list OR
!   s_tor_min = 0.1,                     ! \
!   s_tor_max = 0.9,                     !  } n_s_tor equi-spaced surfaces
!   n_s_tor   = 9,                       ! /
    sign_sqrtg = -1.0,                   ! sign of the Jacobian sqrt(g)
    max_n_fieldlines = 200,              ! maximum field lines per surface
    should_calc_shaing_callen = .true.,  ! compute $\lambda_{bB}^\mathrm{LC}$
    n_eta = 100,                         ! level resolution for trapped
                                         ! particle fraction computation
    unsafe_mode = .false.                ! if .true., NaN-fill outputs for
                                         ! surfaces that fail a sanity check
                                         ! instead of aborting execution
/

The type of omnigenity is set by the helicity

type of omnigenity	M_pol	N_tor
quasi-axisymmetric	1	0
quasi-isodynamic	0	$N_p$
quasi-helicalsymmetric	$M$	$N_p$

where $N_p$ is the number of field periods and $M$ is given by the poloidal mode number $m$ of the strongest mode $(m,n=N_p)$ of the Boozer spectrum

$$ B(\vartheta, \varphi) = \sum_{m,n} B_{m,n} \cos{(m\vartheta - n\varphi)}. \tag{4} $$

The list of surfaces on which to compute can either be given explicitly in s_tor OR via a uniform range. sign_sqrtg is globally applied to all output coefficients to account for different coordinate conventions. It should be set to the same value as signgs in the VMEC output wout_*.nc and is usually sign_sqrtg=-1.0.

By default (unsafe_mode = .false.), any failed sanity check halts the run immediately with an error. This is the recommended behaviour as those checks point out not suited inputs e.g. violation of stellarator symmetry. Setting unsafe_mode = .true. allows the run to continue, but outputs are set to NaN for any surface where a check failed.

Results are written to rabe.nc (NetCDF) and rabe.dat (plain text), with one value per flux surface. Both files contain the same variables:

Variable	Description
s_tor	toroidal flux $\psi$ normalized to flux at edge $\psi_a$ as $s_\mathrm{tor} = \psi/\psi_a$
Lambda_A	$1/\sqrt{\nu_\ast}$ factor ($\Lambda_\mathrm{A}$ in Eq. 3)
Lambda_B	$1/\nu_\ast$ factor ($\Lambda_\mathrm{B}$ in Eq. 3)
nu_star_crit	lower collisionality limit for asymptotic model validity
Lambda_S	$\sqrt{\nu_\ast}$ correction for finite boundary layer width
split_maxima	1 if omnigeneity violation is too strong, 0 otherwise
R	major radius [m] (reference length scale for $\nu_\ast$)

split_maxima warns the user to treat the results with caution. If the violation of omnigenity is too strong, local maxima contours are not merely deformed, but also get split, which this flag notes.

For fast runs suited for optimization, we recommend to set should_calc_shaing_callen = .false.. If it is enabled, the output is extended by

Variable	Description
lambda_LC_bB	omnigenous Shaing-Callen coefficient $\lambda_{bB}^\mathrm{LC}$
remainder	non-omnigenous remainder (only as a prototype)

The remainder is a proxy of how much $\lambda_{bB}^\mathrm{LC}$ differs from the actual $\lambda_{bB}^\mathrm{SC}$, but it does not include the effect of bootstrap resonances and is not yet fully validated.

Build and Tests

We use CMake for build configuration. If it is available on your machine, we recommend Ninja as the generator

export CMAKE_GENERATOR=Ninja

Run

make

to build the executable (debug build) or make CONFIG=Release for an optimized build. You can run the main suite of tests used to ensure correctness of the code with

make test

or run all tests (including ones that take quite some time)

make test_all

The tests as well as their description, can be found in test.

Overriding the libneo dependency

By default the build fetches a pinned libneo commit. Two explicit options change this:

• -DLIBNEO_REF=<branch|tag|sha> selects a different git ref:

  make LIBNEO_REF=main
  # or directly: cmake -S . -B build -DLIBNEO_REF=main
  

• -DLIBNEO_PATH=<dir> uses a local checkout instead of fetching:

  make LIBNEO_PATH=/path/to/libneo
  # or directly: cmake -S . -B build -DLIBNEO_PATH=/path/to/libneo
  

Third Party

System libraries required at build time:

• NetCDF-Fortran for NetCDF output

Fetched automatically during build:

• libneo for field file I/O; pass -DLIBNEO_PATH=<dir> to use a local checkout instead (MIT)
• quadpack for numerical integration (BSD-3-Clause)
• pyplot-fortran optional for visualization; source and license under plot_lib (BSD-3-Clause)

References

[1] C.G Albert et al., On the convergence of bootstrap current to the Shaing–Callen limit in stellarators, Journal of Plasma Physics, 91(3), p. E77. doi:10.1017/S0022377825000200 (2025)

[2] M. Landreman and P. J. Catto, Omnigenity as generalized quasisymmetry, Phys. Plasmas 19, 056103 doi.org/10.1063/1.3693187 (2012)

[3] P. Helander, J. Geiger, and H. Maassberg, “On the bootstrap current in stellarators and tokamaks”, Phys. Plasmas 18, 092505 doi.org/10.1063/1.3633940 (2011)

[4] M. Landreman et al., Optimization of quasi-symmetric stellarators with self-consistent bootstrap current and energetic particle confinement, Phys. Plasmas 29, doi:10.1063/5.0098166 (2022)

[5] John R. Cary & Svetlana G. Shasharina, Omnigenity and quasihelicity in helical plasma confinement systems, Phys. Plasmas 4, 3323–3333, doi:10.1063/1.872473 (1997)