radiant-fulcrum-workflow 0.3.2

Radiant DIA workflow plugin for Fulcrum Pipeline

Radiant DIA workflow plugin for Fulcrum Pipeline

This plugin permits running Radiant DIA™ searches with straightforward configuration. Many key choices are made for the user to simplify the experience.

Installation

This library requires Python 3.10+ and can be installed with pip:

pip install 'radiant-fulcrum-workflow[local]'

Basic Usage

After installation, you can directly run the radiant_fulcrum command from the terminal:

radiant_fulcrum --library /path/to/library.tsv --fasta /path/to/database.fasta --config /path/to/config.radiantConfig file1.mzML file2.mzML

For a full list of arguments, run:

radiant_fulcrum --help

Advanced Usage in the Fulcrum Pipeline

This package provides plugins for Fulcrum Pipeline™.

After installation you may use the following parameters:

workflow = "radiant"
library = "/path/to/library.tsv"
fasta = "/path/to/database.fasta"
config = "/path/to/config.radiantConfig"

mzml = [
"file1.mzML",
"file2.mzML",
]

For a complete list of supported parameters, see the project's documentation (linked in the sidebar above).