Raugraf
Pangenomic diversity metrics
Install
pipx install raugraf
Tools
Local Complexity/Node Radius
raugraf local-complexity \
--graph mygraph.gfa \ # GFA from PGGB (or at least passed thru smooothxg and odgi)
--jumps 20 \ # Traverse up to 20 nodes away from the focal node
--node-bed out.bedGraph # Bedgraph of local complexity per node for each path in the pangenome
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