py-rcsb_exdb
RCSB exchange database extraction and loading workflow tools
Introduction
This module contains a collection of utility classes for extracting data from the RCSB exchange database and subsequently reloading processed or integrated data.
Installation
Download the library source software from the project repository:
git clone --recurse-submodules https://github.com/rcsb/py-rcsb_exdb.git
Optionally, run test suite (Python versions 2.7 and 3.7) using tox:
tox
Installation is via the program pip. To run tests from the source tree, the package must be installed in editable mode (i.e. -e):
pip install -e . --extra-index-url https://pypi.anaconda.org/OpenEye/simple
# or using uv
uv pip install -e .
Installing in Ubuntu Linux (tested in 18.04)
You will need a few packages, before pip install . can work:
sudo apt install flex bison
Installing on macOS
To use and develop this package on macOS requires a number of packages that are not distributed as part of the base macOS operating system. The following steps provide one approach to creating the development environment for this package. First, install the Apple XCode package and associate command-line tools. This will provide essential compilers and supporting tools. The HomeBrew package manager provides further access to a variety of common open source services and tools. Follow the instructions provided by at the HomeBrew site to install this system. Once HomeBrew is installed, you can further install the MongoDB packages which are required to support the ExDB tools. HomeBrew also provides a variety of options for managing a Python virtual environments.
Release files for rcsb.exdb 1.36
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| rcsb_exdb-1.36.tar.gz | 97.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| rcsb_exdb-1.36-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 219.3 kB
Release files / rcsb_exdb-1.36.tar.gz
| Download URL | rcsb_exdb-1.36.tar.gz |
|---|---|
| Size | 97.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.13
|
Release files / rcsb_exdb-1.36-py3-none-any.whl
| Download URL | rcsb_exdb-1.36-py3-none-any.whl |
|---|---|
| Size | 121.9 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.12.13
|
