A Store back-end for rdflib to allow for reading and querying HDT documents.
Requirements
Python version 3.6.4 or higher
gcc/clang with c++11 support
Python Development headers ..
You should have the Python.h header available on your system.For example, for Python 3.6, install the python3.6-dev package on Debian/Ubuntu systems.
Installation
Installation using pipenv or a virtualenv is strongly advised!
PyPi installation (recommended)
# you can install using pip
pip install rdflib-hdt
# or you can use pipenv
pipenv install rdflib-hdt
Manual installation
Requirement: pipenv
git clone https://github.com/Callidon/pyHDT
cd pyHDT/
./install.sh
Getting started
You can use the rdflib-hdt library in two modes: as an rdflib Graph or as a raw HDT document.
Graph usage (recommended)
from rdflib import Graph
from rdflib_hdt import HDTStore
from rdflib.namespace import FOAF
# Load an HDT file. Missing indexes are generated automatically
# You can provide the index file by putting them in the same directory than the HDT file.
store = HDTStore("test.hdt")
# Display some metadata about the HDT document itself
print(f"Number of RDF triples: {len(store)}")
print(f"Number of subjects: {store.nb_subjects}")
print(f"Number of predicates: {store.nb_predicates}")
print(f"Number of objects: {store.nb_objects}")
print(f"Number of shared subject-object: {store.nb_shared}")
Using the RDFlib API, you can also execute SPARQL queries over an HDT document. If you do so, we recommend that you first call the optimize_sparql function, which optimize the RDFlib SPARQL query engine in the context of HDT documents.
from rdflib import Graph
from rdflib_hdt import HDTStore, optimize_sparql
# Calling this function optimizes the RDFlib SPARQL engine for HDT documents
optimize_sparql()
graph = Graph(store=HDTStore("test.hdt"))
# You can execute SPARQL queries using the regular RDFlib API
qres = graph.query("""
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
SELECT ?name ?friend WHERE {
?a foaf:knows ?b.
?a foaf:name ?name.
?b foaf:name ?friend.
}""")
for row in qres:
print(f"{row.name} knows {row.friend}")
HDT Document usage
from rdflib_hdt import HDTDocument
# Load an HDT file. Missing indexes are generated automatically.
# You can provide the index file by putting them in the same directory than the HDT file.
document = HDTDocument("test.hdt")
# Display some metadata about the HDT document itself
print(f"Number of RDF triples: {document.total_triples}")
print(f"Number of subjects: {document.nb_subjects}")
print(f"Number of predicates: {document.nb_predicates}")
print(f"Number of objects: {document.nb_objects}")
print(f"Number of shared subject-object: {document.nb_shared}")
# Fetch all triples that matches { ?s foaf:name ?o }
# Use None to indicates variables
triples, cardinality = document.search_triples((None, FOAF("name"), None))
print(f"Cardinality of (?s foaf:name ?o): {cardinality}")
for s, p, o in triples:
print(triple)
# The search also support limit and offset
triples, cardinality = document.search_triples((None, FOAF("name"), None), limit=10, offset=100)
# etc ...
An HDT document also provides support for evaluating joins over a set of triples patterns.
from rdflib_hdt import HDTDocument
from rdflib import Variable
from rdflib.namespace import FOAF, RDF
document = HDTDocument("test.hdt")
# find the names of two entities that know each other
tp_a = (Variable("a"), FOAF("knows"), Variable("b"))
tp_b = (Variable("a"), FOAF("name"), Variable("name"))
tp_c = (Variable("b"), FOAF("name"), Variable("friend"))
query = set([tp_a, tp_b, tp_c])
iterator = document.search_join(query)
print(f"Estimated join cardinality: {len(iterator)}")
# Join results are produced as ResultRow, like in the RDFlib SPARQL API
for row in iterator:
print(f"{row.name} knows {row.friend}")
Handling non UTF-8 strings in python
If the HDT document has been encoded with a non UTF-8 encoding the previous code won’t work correctly and will result in a UnicodeDecodeError. More details on how to convert string to str from C++ to Python here
To handle this, we doubled the API of the HDT document by adding:
search_triples_bytes(...) return an iterator of triples as (py::bytes, py::bytes, py::bytes)
search_join_bytes(...) return an iterator of sets of solutions mapping as py::set(py::bytes, py::bytes)
convert_tripleid_bytes(...) return a triple as: (py::bytes, py::bytes, py::bytes)
convert_id_bytes(...) return a py::bytes
Parameters and documentation are the same as the standard version
from rdflib_hdt import HDTDocument
document = HDTDocument("test.hdt")
it = document.search_triple_bytes("", "", "")
for s, p, o in it:
print(s, p, o) # print b'...', b'...', b'...'
# now decode it, or handle any error
try:
s, p, o = s.decode('UTF-8'), p.decode('UTF-8'), o.decode('UTF-8')
except UnicodeDecodeError as err:
# try another other codecs, ignore error, etc
pass
Metadata
Release files for rdflib-hdt 3.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| rdflib_hdt-3.3-cp39-cp39-macosx_10_9_universal2.whl | CPython 3.9 | CPython 3.9 | macOS 10.9+ universal2 (ARM64, x86-64) | Details for rdflib_hdt-3.3-cp39-cp39-macosx_10_9_universal2.whl |
Release files / rdflib_hdt-3.3-cp39-cp39-macosx_10_9_universal2.whl
| Download URL | rdflib_hdt-3.3-cp39-cp39-macosx_10_9_universal2.whl |
|---|---|
| Size | 1.2 MB |
| Tags | CPython 3.9 macOS 10.9+ universal2 (ARM64, x86-64) |
|
SHA-256 checksum How to use checksums |
be752c773ec45527a41729adace7f6dc0ef4e7feeb1c8534d3942c2c2ca8e6fc
|
|
BLAKE2b-256 checksum How to use checksums |
3a8813a38f0e2c43150c454c700ab78323faf91740a606a0a511699563086c76
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.2.0 CPython/3.9.6
|
Security for rdflib-hdt 3.3
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.