re-mcp 3.0.0rc3

Multi-backend reverse-engineering MCP server

RE-MCP

A multi-backend reverse-engineering MCP server. Exposes binary analysis capabilities from IDA Pro and Ghidra over the Model Context Protocol, letting LLMs drive reverse-engineering tools directly. Supports multiple simultaneous databases through a supervisor/worker architecture.

Both backends are standalone servers, not plugins. They use headless APIs (idalib for IDA, pyhidra for Ghidra) to run analysis engines without a GUI.

Backends

Backend	Package	Requirements
IDA Pro	re-mcp-ida	IDA Pro 9+ with a valid license
Ghidra	re-mcp-ghidra	Ghidra 11+, JDK 21+

Both backends share a common tool interface — core analysis tools use the same names, parameters, and response shapes — so LLM workflows are portable across backends. Each backend also has tools for platform-specific features (e.g. IDA: file region mapping, executable rebuilding, IDC evaluation, IDAPython scripting; Ghidra: Function ID analysis, data type archives).

Requirements

• Python 3.12+
• uv package manager (recommended) or pip
• macOS, Windows, or Linux
• At least one supported backend installed on the same machine

Installation

Install individual backend packages directly, or install re-mcp and select a backend with --backend:

# Individual backend packages (each provides its own CLI)
uv tool install re-mcp-ida
uv tool install re-mcp-ghidra

# Or install the core package and use --backend to select
uv tool install re-mcp --with re-mcp-ida --with re-mcp-ghidra

With pip:

pip install re-mcp-ida        # IDA only
pip install re-mcp-ghidra     # Ghidra only
pip install re-mcp re-mcp-ida re-mcp-ghidra  # Unified CLI with both backends

From source

git clone https://github.com/jtsylve/ida-mcp && cd ida-mcp
uv sync

Or with pip:

git clone https://github.com/jtsylve/ida-mcp && cd ida-mcp
pip install -e packages/re-mcp-core -e packages/re-mcp-ida -e packages/re-mcp-ghidra

Finding IDA Pro

The IDA backend looks for your IDA Pro installation in the following order:

1. IDADIR environment variable — checked first; set this if IDA is in a non-standard location.
2. IDA's own config file — Paths.ida-install-dir in ~/.idapro/ida-config.json (macOS/Linux) or %APPDATA%\Hex-Rays\IDA Pro\ida-config.json (Windows). If the IDAUSR environment variable is set, it is used as the config directory instead.
3. Platform-specific default paths:

Platform	Default search paths
macOS	/Applications/IDA Professional *.app/Contents/MacOS
Windows	C:\Program Files\IDA Professional 9.3, C:\Program Files\IDA Pro 9.3, and Program Files (x86) equivalents
Linux	/opt/ida-pro-9.3, /opt/idapro-9.3, /opt/ida-9.3, ~/ida-pro-9.3, ~/idapro-9.3

The idapro package is loaded at runtime directly from your local IDA Pro installation — no extra setup steps or environment variables are needed if IDA is installed in a standard location.

Finding Ghidra

The Ghidra backend looks for your Ghidra installation in the following order:

1. GHIDRA_INSTALL_DIR environment variable — checked first; set this if Ghidra is in a non-standard location.
2. Config file — ghidra-install-dir in ~/.ghidra/ghidra-config.json.
3. Platform-specific default paths:

Platform	Default search paths
macOS	/Applications/ghidra_*, ~/ghidra_*
Windows	C:\ghidra_*, ~/ghidra_*
Linux	/opt/ghidra_*, /usr/local/ghidra_*, ~/ghidra_*

Usage

Running the server

Each backend has its own CLI, or use the unified re-mcp command with --backend:

# Individual backend CLIs
uvx re-mcp-ida
uvx re-mcp-ghidra

# Unified CLI (requires backend package installed alongside)
uvx --with re-mcp-ida re-mcp --backend ida
uvx --with re-mcp-ghidra re-mcp --backend ghidra

Both CLIs support the same subcommands:

Command	Description
<backend> (or <backend> stdio)	Direct stdio mode — single-session, workers die on disconnect (default)
<backend> proxy	Stdio proxy that auto-spawns a persistent HTTP daemon
<backend> serve	Start the HTTP daemon directly (for manual daemon management)
<backend> stop	Gracefully shut down a running daemon
<backend> backends	List installed backends (most useful with the unified re-mcp CLI)

The default mode runs a direct stdio server — the simplest transport, widely supported across MCP clients. Workers die when the client disconnects.

For persistent state across reconnections, use <backend> proxy. This mode auto-spawns a persistent HTTP daemon behind the scenes, handling port allocation and authentication transparently. Workers and database state survive client reconnections. The daemon shuts down automatically after 5 minutes of inactivity (configurable via <PREFIX>IDLE_TIMEOUT).

Running without installing

# Individual backend packages
IDADIR=/path/to/ida uvx re-mcp-ida
GHIDRA_INSTALL_DIR=/path/to/ghidra uvx re-mcp-ghidra

# Unified package
IDADIR=/path/to/ida uvx --with re-mcp-ida re-mcp --backend ida
GHIDRA_INSTALL_DIR=/path/to/ghidra uvx --with re-mcp-ghidra re-mcp --backend ghidra

# Individual backend packages
$env:IDADIR = "C:\Program Files\IDA Professional 9.3"
uvx re-mcp-ida

$env:GHIDRA_INSTALL_DIR = "C:\ghidra_11.4.3_PUBLIC"
uvx re-mcp-ghidra

# Unified package
$env:IDADIR = "C:\Program Files\IDA Professional 9.3"
uvx --with re-mcp-ida re-mcp --backend ida

MCP client configuration

Add to your MCP client config (e.g. Claude Desktop claude_desktop_config.json):

IDA backend:

{
  "mcpServers": {
    "ida": {
      "command": "uvx",
      "args": ["re-mcp-ida"]
    }
  }
}

Ghidra backend:

{
  "mcpServers": {
    "ghidra": {
      "command": "uvx",
      "args": ["re-mcp-ghidra"]
    }
  }
}

Both backends simultaneously:

{
  "mcpServers": {
    "ida": {
      "command": "uvx",
      "args": ["re-mcp-ida"]
    },
    "ghidra": {
      "command": "uvx",
      "args": ["re-mcp-ghidra"]
    }
  }
}

Using the unified re-mcp CLI (when installed via uv tool install re-mcp --with re-mcp-ida):

{
  "mcpServers": {
    "ida": {
      "command": "re-mcp",
      "args": ["--backend", "ida"]
    }
  }
}

If the backend command is installed on your PATH (e.g. via pip install), use it directly:

{
  "mcpServers": {
    "ida": {
      "command": "re-mcp-ida"
    }
  }
}

If the command isn't on your PATH, use the full path to the executable:

{
  "mcpServers": {
    "ida": {
      "command": "/home/user/.pyenv/versions/<version>/bin/re-mcp-ida"
    }
  }
}

If the backend (IDA or Ghidra) isn't in a default location, add the install directory via the env key:

{
  "mcpServers": {
    "ida": {
      "command": "uvx",
      "args": ["re-mcp-ida"],
      "env": {
        "IDADIR": "/path/to/ida"
      }
    },
    "ghidra": {
      "command": "uvx",
      "args": ["re-mcp-ghidra"],
      "env": {
        "GHIDRA_INSTALL_DIR": "/path/to/ghidra"
      }
    }
  }
}

Connecting to a running daemon directly:

If you started the daemon manually with <backend> serve, the connection details (host, port, bearer token) are in the state file. Clients that support streamable HTTP can connect directly.

State file locations:

• macOS: ~/Library/Application Support/<backend>/daemon.json
• Linux: $XDG_STATE_HOME/<backend>/daemon.json (defaults to ~/.local/state/<backend>/daemon.json)
• Windows: %LOCALAPPDATA%\<backend>\daemon.json

Where <backend> is re-mcp-ida or re-mcp-ghidra.

{
  "mcpServers": {
    "ida": {
      "type": "streamable-http",
      "url": "http://127.0.0.1:<port>/mcp",
      "headers": {
        "Authorization": "Bearer <token>"
      }
    }
  }
}

Basic workflow

1. Open a binary — call open_database with the path to a binary (or existing database file), then wait_for_analysis to block until it is ready
2. Analyze — use the available tools (list functions, decompile, search strings, read bytes, etc.)
3. Close — call close_database when done (auto-saves by default)

Raw binaries must be in a writable directory since both backends create database files alongside them. When opening an existing database, the original binary does not need to be present.

Multi-database mode

Multiple databases can be open at the same time. By default, open_database keeps previously opened databases open. Pass keep_open=False to save and close databases owned by the current session before opening the new one. All tools except management tools (open_database, close_database, save_database, list_databases, wait_for_analysis, list_targets) require the database parameter (the stem ID returned by open_database or list_databases).

open_database("first.bin")                              # spawns worker (returns immediately)
wait_for_analysis(database="first")                     # blocks until ready
open_database("second.bin")                             # spawns second worker
wait_for_analysis(database="second")                    # blocks until ready
decompile_function(address="main", database="first")    # targets first
close_database(database="second")                       # closes second

Environment variables

Each backend uses its own environment variable prefix (IDA_MCP_ or GHIDRA_MCP_). The table below uses <PREFIX> as a placeholder.

Backend installation:

Variable	Backend	Default	Description
IDADIR	IDA	(auto-detected)	Path to IDA Pro installation directory
GHIDRA_INSTALL_DIR	Ghidra	(auto-detected)	Path to Ghidra installation directory

Shared settings (replace <PREFIX> with IDA_MCP_ or GHIDRA_MCP_):

Variable	Default	Description
<PREFIX>MAX_WORKERS	(unlimited)	Maximum simultaneous databases (clamped to 1-8 when set)
<PREFIX>LOG_LEVEL	WARNING	Logging level (DEBUG, INFO, WARNING, ERROR, CRITICAL) — output goes to stderr
<PREFIX>LOG_DIR	(unset)	Directory for per-run log files. Each component logs to <dir>/<run_id>-<label>.log, each worker to <dir>/<run_id>-worker-<db>.log, and each worker's raw stderr to <dir>/<run_id>-worker-<db>.stderr. When unset, logs go only to stderr.
<PREFIX>IDLE_TIMEOUT	300	Idle auto-shutdown timeout in seconds for auto-spawned daemons. Set to 0 to disable. <backend> serve defaults to 0 (use --idle-timeout=N to override).
<PREFIX>DISABLE_EXECUTE	(unset)	Set to 1, true, yes, or on to hide the execute meta-tool (sandboxed Python code mode)
<PREFIX>DISABLE_BATCH	(unset)	Set to 1, true, yes, or on to hide the batch meta-tool
<PREFIX>DISABLE_TOOL_SEARCH	(unset)	Set to 1, true, yes, or on to disable server-side progressive tool disclosure — all tools become directly visible and callable, and the search_tools and get_schema meta-tools are removed. Useful with clients that provide their own tool deferral (e.g. Claude Code).

IDA-only settings:

Variable	Default	Description
IDA_MCP_ALLOW_SCRIPTS	(unset)	Set to 1, true, or yes to enable the run_script tool for arbitrary IDAPython execution

Tools

To keep token usage manageable, only common analysis tools and management tools are directly visible to clients. The rest are discoverable and callable through meta-tools:

• search_tools — regex search over non-pinned tool names, descriptions, and tags (pinned tools are already visible).
• get_schema — parameter schemas and return shapes for tools by name.
• call — lightweight proxy for calling any tool by name, including hidden tools not in the client tool list.
• execute — sandboxed Python that chains multiple await invoke(name, params) calls in a single round trip. Supports asyncio.gather for parallel queries, loops, and conditional logic between calls.
• batch — sequential multi-tool execution with per-item error collection and progress reporting (up to 50 operations per call).

Management tools (open_database, close_database, save_database, list_databases, wait_for_analysis, list_targets) are always visible. Most must be called directly — save_database and list_databases are the exceptions, also callable through call, execute, and batch for use in multi-step workflows.

The full tool catalog spans these areas:

• Database — open/close/save/list databases, file region mapping, metadata
• Functions — list, query, decompile, disassemble, rename, prototypes, chunks, stack frames
• Decompiler — pseudocode variable renaming/retyping, decompiler comments, microcode
• Ctree — AST exploration and pattern matching
• Cross-References — xref queries, call graphs, xref creation/deletion
• Imports & Exports — imported functions, exported symbols, entry point listing and manipulation
• Search — string extraction, byte patterns, text in disassembly, immediate values, string-to-code references, string list rebuilding
• Types & Structures — local types, structs, enums, type parsing and application, source declarations
• Instructions & Operands — decode instructions, resolve operand values, change operand display format
• Control Flow — basic blocks, CFG edges, switch/jump tables
• Data — raw byte reading, hex dumps, segment listing, pointer tables
• Patching — byte patching, instruction assembly, function/code creation, data loading
• Data Definition — define bytes, words, dwords, qwords, floats, doubles, strings, and arrays
• Segments — create, modify, and rebase segments
• Names & Comments — rename addresses, manage comments (get, set, and append)
• Demangling — C++ symbol name demangling
• Analysis — auto-analysis, fixups, exception handlers, segment registers
• Address Metadata — source line numbers, analysis flags, library item marking
• Register Tracking — register and stack pointer value tracking
• Register Variables — register-to-name mappings within functions
• Signatures — FLIRT signatures/type libraries (IDA), Function ID/data type archives (Ghidra)
• Export — batch decompilation/disassembly, output file generation
• Snapshots — take, list, and restore database snapshots
• Processor — architecture info, register names, instruction classification
• Bookmarks — marked-position management
• Colors — address/function coloring
• Undo — undo/redo operations
• Directory Tree — folder organization
• Utility — number conversion, expression evaluation, scripting

All tools include MCP annotations (readOnlyHint, destructiveHint, idempotentHint, openWorldHint) so clients can distinguish safe reads from mutations and prompt for confirmation on destructive operations. Mutation tools return old values alongside new values for change tracking.

See docs/tools.md for the complete tools reference.

Resources

The server exposes MCP resources — read-only, cacheable endpoints for structured database context:

• Static binary data — imports, exports, entry points (with regex search variants)
• Aggregate snapshot — statistics (function/segment/entry point/string/name counts, code coverage)
• Supervisor — <scheme>://databases lists all open databases with worker state

The URI scheme is ida:// for the IDA backend and ghidra:// for the Ghidra backend.

Prompts

The server provides MCP prompts — guided workflow templates that instruct the LLM to use tools in a structured sequence. Prompts are currently available for the IDA backend only.

• survey_binary — binary triage producing an executive summary
• analyze_function — full single-function analysis with decompilation, data flow, and behavior summary
• diff_before_after — preview the effect of renaming/retyping on decompiler output
• classify_functions — categorize functions by behavioral pattern
• find_crypto_constants — scan for known cryptographic constants
• auto_rename_strings — suggest function renames based on string references
• apply_abi — apply known ABI type information to identified functions
• export_idc_script — generate a script that reproduces user annotations

Architecture

The project is a monorepo with three packages:

• re-mcp-core — shared supervisor infrastructure, transport, and common utilities
• re-mcp-ida — IDA Pro backend
• re-mcp-ghidra — Ghidra backend

See docs/architecture.md for detailed architecture documentation.

Development

# With uv (recommended)
uv sync                              # Install dependencies
uv run ruff check packages/          # Lint
uv run ruff format packages/         # Format
uv run ruff check --fix packages/    # Lint with auto-fix

# With pip
pip install -e packages/re-mcp-core -e packages/re-mcp-ida -e packages/re-mcp-ghidra
pip install pre-commit pytest pytest-asyncio ruff jsonschema
ruff check packages/
ruff format packages/
ruff check --fix packages/

Pre-commit hooks run REUSE compliance checks, ruff lint (with --fix --exit-non-zero-on-fix), ruff format, idalib threading lint, and pytest on every commit.

License

This project is dual-licensed under the MIT License and Apache License 2.0.

© 2026 Joe T. Sylve, Ph.D.

This project is REUSE compliant.

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IDA Pro and Hex-Rays are trademarks of Hex-Rays SA. Ghidra is developed by the NSA. RE-MCP is an independent project and is not affiliated with or endorsed by Hex-Rays or the NSA.