Read the NIfTI file and resample it into a 3D NumPy array.
Project description
read_nii_to_numpy
Read the NIfTI file and resample it into a 3D NumPy array.
Installation
pip install read_nii_to_numpy
Usage
from read_nii_to_numpy import nii_file_original_zoom, nii_file_to_numpy
# Get original zoom
# the output (x_len, y_len, z_len) means:
# 1 voxel in x direction corresponds to x_len (mm)
# 1 voxel in y direction corresponds to y_len (mm)
# 1 voxel in z direction corresponds to z_len (mm)
print(nii_file_original_zoom("CT.nii"))
# Get original data matrix
odm = nii_file_to_numpy("CT.nii")
print(odm.shape)
# Get reshaped data matrix
rdm = nii_file_to_numpy("CT.nii", 1.0, 1.0, 1.0)
print(rdm.shape)
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