TRAPI → Cypher transpiler
Installation
pip install reasoner-transpiler
Usage
from reasoner_transpiler.cypher import get_query
qgraph = {
"nodes": {
"diabetes": {
"ids": ["MONDO:0005148"],
},
"phenotype": {
"categories": ["biolink:PhenotypicFeature"],
},
},
"edges": {
"has phenotype": {
"subject": "diabetes",
"predicates": ["biolink:has_phenotype"],
"object": "phenotype",
},
},
}
cypher = get_query(qgraph)
Biolink Model
This package uses the Biolink Model Toolkit to access the Biolink Model. Optionally, choose a specific version of the Biolink Model with the environment variable BL_VERSION. Otherwise, the latest version used by the Biolink Model Toolkit will be used.
export BL_VERSION=4.1.6
3 maintainers
Metadata
3 maintainers
Release files for reasoner-transpiler 2.4.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| reasoner_transpiler-2.4.2.tar.gz | 29.2 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| reasoner_transpiler-2.4.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 50.2 kB
Release files / reasoner_transpiler-2.4.2.tar.gz
| Download URL | reasoner_transpiler-2.4.2.tar.gz |
|---|---|
| Size | 29.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
|
Release files / reasoner_transpiler-2.4.2-py3-none-any.whl
| Download URL | reasoner_transpiler-2.4.2-py3-none-any.whl |
|---|---|
| Size | 21.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
3bfe9da69d7a137b093f5c98dd39bfae90fb12f34d630311b27006687cdf3e4c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
|
Security for reasoner-transpiler 2.4.2
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No provenance found
None of the files in this release were uploaded with provenance metadata.
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