regref
To explain regref I will walk through the following example:
./regref.py test-data/z.tab '${2}' '${3}' < test-data/z.fna
z.fna is a FASTA file with mangled headers where all non-letter or number
characters have been replaced with underscores.
z.tab is a table that contains the mangled names (in column 2) and the
original names (in column 3).
The regref command reads the FASTA file from standard input and then replaces
every occurance of the mangled string with the original string.
The arguments '${2}' and '${3}' refer to columns in z.tab by column number.
regref will replace every occurance of each pattern. The example below
replaces the mangled string in a tree with a single-quoted orginal string.
./regref.py test-data/z.tab '${2}' "'\${3}'" < test-data/z.tre
1 maintainer
Metadata
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Release files for regref 2.1.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| regref-2.1.1.tar.gz | 3.3 kB | Without provenance | Details for regref-2.1.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| regref-2.1.1-py3-none-any.whl | Python 3 | none | any | Details for regref-2.1.1-py3-none-any.whl |
Total release size: 8.1 kB
Release files / regref-2.1.1.tar.gz
| Download URL | regref-2.1.1.tar.gz |
|---|---|
| Size | 3.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
2b68fc0fc6a046c3d52b8eb93127e5b1bff91d96d4cb7d1ee63ba4d674c7dd30
|
|
BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.4
|
Release files / regref-2.1.1-py3-none-any.whl
| Download URL | regref-2.1.1-py3-none-any.whl |
|---|---|
| Size | 4.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
e943a49f6d9655f45278139ab05a355b4f529dbdb88c1be9941a13ff7bc95409
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BLAKE2b-256 checksum How to use checksums |
02d32483b7f9f5e1140eacf738136edf5a15e58b49e9a39f75fb32c569128a81
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/1.13.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.32.2 CPython/3.7.4
|
Security for regref 2.1.1
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