A Redescription-based framework for multi-omics analysis
Project description
Remics
A framework for Redescription-based multi-omics analysis
๐ Project File Structure
The project structure is as follows:
Remics/
โ
โโโ ๐ src/ # main source code
โโโ ๐ tcga/
โ โโโ ๐ compute_cuna_tcga.py # Reads the multi-omics files, performs feature selection, and compute cumulants
โ โโโ ๐ compute_cures_tcga.py # Reads the cumulants, associated vectors, integrated multi-omics files and computes CuRES, while also performing the classification task
โ โโโ ๐ cuna_networks_tcga.py # Reads the cumulants file and compute the networks, its communities, and ranking of nodes according to importance in the network
โ โโโ ๐ remics/
โ โโโ ๐ cumulants.py # computes cumulants
โ โโโ ๐ cures.py # computes CuRES
โ โโโ ๐ cuna.py # computes CuNA
โ โโโ ๐ cumulants.jl # Julia subroutine performing cumulants
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