repmsa 0.1.6

Finding the representetive seq in MSA

Table of Contents

• What is repmsa?
• Installation
• Usage

What is repmsa?

Creating a percentage identity matrix from a multiple sequence alignment and then ranking them to select the best sequence representetive in the Multiple Sequence Alignment. repmsa ranks the sequences based on highest identity.

Installation

pip install repmsa

Usage

from repmsa import RankMatrix
var = RankMatrix(msa_file)
print(var.dm) #prints the distance matrix
df #prints the distance matrix in data frame.
var.id_iter #is the iterator from highest ranked to lowest rank.
var.ranked #returns the ranked list in a listed tuple.
var.topids() # returns the id of the highest ranked sequence, each time its called it moves the next highest one.
var.seq_by_id('QIQ56215.1') # returns the sequence by the id that is provided.