resarchpaper 0.1.0

CLI tool to fetch PubMed papers with non-academic authors

Research Paper Fetcher

A Python tool to fetch research papers from PubMed based on a user query, filtering for papers with authors affiliated with pharmaceutical or biotech companies, and exporting the results to CSV.

Features

• Uses PubMed API with full query syntax support
• Filters for non-academic authors (pharma/biotech affiliations)
• Command-line interface with options for debug info, output file, email & API key
• Outputs data including PubMed ID, title, publication date, author affiliations, and corresponding author email
• Written in typed Python with Poetry for dependency management

Installation

Make sure you have Python 3.8+ installed.

1. Clone the repository: git clone https://github.com/ritujadik/ResarchPaperProject.git cd ResarchPaperProject

2. Install dependencies with Poetry: poetry install

3. Usage poetry shell Run the CLI tool: "python -m resarchpaper "cancer therapy" --email [e-mail] --file output.csv --debug" 4.Command-line Options --email (required): Your email for NCBI Entrez API. --api-key (optional): Your NCBI API key for higher rate limits. --file or -f: CSV output filename (prints to console if not specified). --debug or -d: Prints debug information during execution. --help or -h: Show help message. 5.Development The project is modular: pubmed_fetcher.py handles PubMed API calls pubmed_processing.py processes and filters articles csvwriter.py exports data to CSV cli.py handles command-line interface 6.External Libraries & Tools Biopython for Entrez API interaction Typer for CLI Poetry for dependency management