Reticle pipeline
Project description
Python-Fiji-Pipeline
This Library includes code related Reticle pipeline workflow.
----- Reticle Pipeline -----
This pipeline includes the following steps:
-
Difference of Gauss. [32 bits] -> process_stack(file_path,sigma1,sigma2)
-
Calculate Binary mask of the step 1 (DoG). [16 bits] -> process_dog_stack(file_path)
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Remove Outliers. [16 bits] -> apply_median_filter(file_path, size)
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Normalize result of Binary Mask. [32 bits] -> normalizar_stack(Binarymask_file_path,original_file_path)
-
Calculate Regions of interest (ROIS), F0, log2(pixel/F0). In this step paralellism cpu code is added. [32 bits] -> process_stack_rois(file_path,roi_size,frame_range)
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