RhizAeon — PA-FF v2.1 Recombination Scanner (Python package)
Python-fronted distribution of the RhizAeon PA-FF engine. The compiled
extension (rhizaeon._native, built by maturin from native/) carries the
clap parser that used to live in the standalone rhizaeon cargo bin, so the
command-line surface is unchanged:
$ pip install rhizaeon
$ rhizaeon --input alignment.fasta --output scan.json --viz viz.json --html report.html
python -m rhizaeon is equivalent to rhizaeon. Manuscript figure/benchmark
helpers (export_figure1_data, export_figure2_data, grand_sweep) live in
the unpublished rust/rhizaeon/crates/rhizaeon-tools crate — run them via
cargo run -p rhizaeon-tools --release --bin <name> from a source checkout.
Development install
$ cd rhizaeon && maturin develop
requires a Rust toolchain (rustup). The engine crate itself lives at
rust/rhizaeon/crates/rhizaeon and stays a pure library (no clap, no bins)
so rhizaeon-wasm builds clean.
1 maintainer
Metadata
1 maintainer
Release files for rhizaeon 0.1.0
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Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| rhizaeon-0.1.0-cp38-abi3-win_amd64.whl | CPython 3.8 | abi3 | Windows x86-64 | Details |
| rhizaeon-0.1.0-cp38-abi3-manylinux_2_34_x86_64.whl | CPython 3.8 | abi3 | Linux glibc 2.34+ x86-64 | Details |
| rhizaeon-0.1.0-cp38-abi3-manylinux_2_34_aarch64.whl | CPython 3.8 | abi3 | Linux glibc 2.34+ ARM64 | Details |
| rhizaeon-0.1.0-cp38-abi3-macosx_11_0_arm64.whl | CPython 3.8 | abi3 | macOS 11.0+ ARM64 | Details |
| rhizaeon-0.1.0-cp38-abi3-macosx_10_12_x86_64.whl | CPython 3.8 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 3.6 MB
Release files / rhizaeon-0.1.0-cp38-abi3-win_amd64.whl
| Download URL | rhizaeon-0.1.0-cp38-abi3-win_amd64.whl |
|---|---|
| Size | 670.5 kB |
| Tags | CPython 3.8 Windows x86-64 abi3 |
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| Size | 757.2 kB |
| Tags | CPython 3.8 Linux glibc 2.34+ x86-64 abi3 |
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| Size | 728.6 kB |
| Tags | CPython 3.8 Linux glibc 2.34+ ARM64 abi3 |
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| Tags | CPython 3.8 abi3 macOS 10.12+ x86-64 |
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