RibDif
RibDif evaluates the usefulness of a given amplicon at differentiating within a genus or species
Installation
Ribdif is most easily installed with pip inside a virtual environment. Make sure your pip version is up to date
conda
pip install git+https://github.com/Rob-murphys/ribdif.git
Next we need to install some dependencies:
conda install -c bioconda vsearch fasttree muscle barrnap -y
Running
ribdif/ribdif -g <some genus name>
Use -h for full options list.
1 maintainer
Metadata
1 maintainer
Release files for ribdif 1.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ribdif-1.1.3.tar.gz | 26.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ribdif-1.1.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 58.7 kB
Release files / ribdif-1.1.3.tar.gz
| Download URL | ribdif-1.1.3.tar.gz |
|---|---|
| Size | 26.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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Release files / ribdif-1.1.3-py3-none-any.whl
| Download URL | ribdif-1.1.3-py3-none-any.whl |
|---|---|
| Size | 32.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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No |
| Uploaded via |
python-httpx/0.23.3
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