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Ribomala is a python package to efficiently analyze ribosome profiling data.

Project description

Ribomala

Ribomala is a python package to efficiently analyze ribosome profiling data.

Features

  • Minimal set of, well maintained, dependencies.
  • Uses python polars for lightening fast data processing
  • OS agnostic
  • Provides ribosome reading frame and periodicity distribution.
  • Provides ribosome occupancy values for E-, P- and A-sites

Installation

Documentation

Documentation can be accessed here. It will walk you through ribosome profiling data analysis from scratch.

TODO

  • Introduce statistical tests
  • Plots

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