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Fast and memory-efficient ANN with a subset-search functionality

Project description

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Reconfigurable Inverted Index (Rii): IVFPQ-based fast and memory efficient approximate nearest neighbor search method with a subset-search functionality.


Summary of features

The search can be operated for a subset of a database. Rii remains fast even after many new items are added.
  • Fast and memory efficient ANN. Rii enables you to run billion-scale search in less than 10 ms.
  • You can run the search over a subset of the whole database
  • Rii Remains fast even after many vectors are newly added (i.e., the data structure can be reconfigured)


You can install the package via pip. This library works with Python 3.5+ on linux.

pip install rii



Basic ANN

import rii
import nanopq
import numpy as np

N, Nt, D = 10000, 1000, 128
X = np.random.random((N, D)).astype(np.float32)  # 10,000 128-dim vectors to be searched
Xt = np.random.random((Nt, D)).astype(np.float32)  # 1,000 128-dim vectors for training
q = np.random.random((D,)).astype(np.float32)  # a 128-dim vector

# Prepare a PQ/OPQ codec with M=32 sub spaces
codec = nanopq.PQ(M=32).fit(vecs=Xt)  # Trained using Xt

# Instantiate a Rii class with the codec
e = rii.Rii(fine_quantizer=codec)

# Add vectors

# Search
ids, dists = e.query(q=q, topk=3)
print(ids, dists)  # e.g., [7484 8173 1556] [15.06257439 15.38533878 16.16935158]

Note that you can construct a PQ codec and instantiate the Rii class at the same time if you want.

e = rii.Rii(fine_quantizer=nanopq.PQ(M=32).fit(vecs=Xt))

Furthermore, you can even write them in one line by chaining a function.

e = rii.Rii(fine_quantizer=nanopq.PQ(M=32).fit(vecs=Xt)).add_configure(vecs=X)

Subset search

# The search can be conducted over a subset of the database
target_ids = np.array([85, 132, 236, 551, 694, 728, 992, 1234])  # Specified by IDs
ids, dists = e.query(q=q, topk=3, target_ids=target_ids)
print(ids, dists)  # e.g., [728  85 132] [14.80522156 15.92787838 16.28690338]

Data addition and reconfiguration

# Add new vectors
X2 = np.random.random((1000, D)).astype(np.float32)
e.add(vecs=X2)  # Now N is 11000
e.query(q=q)  # Ok. (0.12 msec / query)

# However, if you add quite a lot of vectors, the search might become slower
# because the data structure has been optimized for the initial item size (N=10000)
X3 = np.random.random((1000000, D)).astype(np.float32) 
e.add(vecs=X3)  # A lot. Now N is 1011000
e.query(q=q)  # Slower (0.96 msec/query)

# In such case, run the reconfigure function. That updates the data structure
e.query(q=q)  # Ok. (0.21 msec / query)

I/O by pickling

import pickle
with open('rii.pkl', 'wb') as f:
    pickle.dump(e, f)
with open('rii.pkl', 'rb') as f:
    e_dumped = pickle.load(f)  # e_dumped is identical to e

Util functions

# Print the current parameters

# Delete all PQ-codes and posting lists. fine_quantizer is kept.

# You can switch the verbose flag
e.verbose = False

# You can merge two Rii instances if they have the same fine_quantizer
e1 = rii.Rii(fine_quantizer=codec)
e2 = rii.Rii(fine_quantizer=codec)
e1.merge(e2)  # Now e1 contains both X1 and X2




Project details

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rii-0.2.3.tar.gz (31.1 kB) Copy SHA256 hash SHA256 Source None Sep 13, 2018

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