Skip to main content

A Python re-implementation of R's loess() local regression smoother

Project description

rLoess

A from-scratch Python implementation of LOESS (LOcally Estimated Scatterplot Smoothing), built to match the behavior of R's built-in stats::loess() as closely as possible — same core algorithm (Cleveland, Devlin & Grosse, 1988), same parameters, same options.

Verified to match statsmodels.nonparametric.smoothers_lowess.lowess (degree=1, non-robust case) to within 1e-8, and includes its own test suite covering signal recovery, span/degree effects, robust fitting, and multivariate predictors.

Features

  • span — fraction of data used in each local neighborhood (like R's span, default 0.75)
  • degree — 0 (local mean), 1 (local linear), or 2 (local quadratic, default) — same as R's degree
  • robust=True — iterative Tukey biweight reweighting, equivalent to R's family="symmetric" (default is R's family="gaussian", i.e. robust=False)
  • Multivariate predictors — degree-2 fits include all cross terms, exactly as R does for loess(y ~ x1 + x2, degree = 2)
  • normalize=True — rescales multiple predictors so distances aren't dominated by whichever variable has the largest scale, matching R's default
  • Standard errors — optional compute_se=True + predict(..., return_se=True), analogous to R's predict(fit, newdata, se = TRUE)
  • summary() — prints span, degree, family, equivalent number of parameters, and residual standard error, similar to summary(loess_fit) in R

Install

pip install numpy
# then just copy the rloess/ folder into your project, or:
pip install -e .

Usage

import numpy as np
from rloess import Loess

x = np.linspace(0, 10, 100)
y = np.sin(x) + np.random.normal(scale=0.2, size=100)

# Equivalent to R:  loess(y ~ x, span = 0.3, degree = 2)
model = Loess(span=0.3, degree=2)
model.fit(x, y)

pred = model.predict(x)                 # fitted values
new_pred = model.predict(np.linspace(0, 10, 500))  # predict on a fine grid

model.summary()

Robust fitting (outlier resistant)

# Equivalent to R:  loess(y ~ x, span = 0.3, degree = 2, family = "symmetric")
model = Loess(span=0.3, degree=2, robust=True)
model.fit(x, y)

model.robustness_weights_   # per-observation weight, near 0 for outliers

Multivariate predictors

X = np.column_stack([x1, x2])   # shape (n, 2)
model = Loess(span=0.5, degree=2, normalize=True)
model.fit(X, y)
model.predict(X_new)             # X_new shape (m, 2)

Standard errors / confidence intervals

model = Loess(span=0.3, degree=2, compute_se=True)
model.fit(x, y)
pred, se = model.predict(x_grid, return_se=True)

lower = pred - 1.96 * se
upper = pred + 1.96 * se

How closely does this match R?

  • The core math is identical: tricube-weighted local polynomial regression, centered at the query point, with the neighborhood defined by the span nearest points (by Euclidean distance after optional predictor scaling).
  • Robustness iterations use the same bisquare reweighting scheme R uses for family="symmetric", with the same default of 4 iterations.
  • This package always computes the exact local fit at every query point — equivalent to R's surface="direct". R's default is surface="interpolate", which fits on a kd-tree of "vertices" and interpolates between them purely as a speed optimization for large datasets. Results from the two should be very close but not bit-for-bit identical; if you need to match R's default output exactly, refit in R with control = loess.control(surface = "direct") for a fair comparison.
  • Standard errors are computed via the usual local-regression variance formula (Var = sigma^2 * ||l(x0)||^2, where l(x0) is the vector of linear weights producing the local fit), with sigma^2 estimated from the residual sum of squares and the trace of the smoother (hat) matrix as the equivalent number of parameters. This mirrors what summary(loess_fit) reports in R, though R's exact degrees-of-freedom bookkeeping (one.delta/two.delta) differs slightly in higher-order terms.
  • span > 1 (R allows this to further smooth beyond using every point) is supported as an approximation — the neighborhood is enlarged by a factor of span rather than following R's exact internal windowing rule for this edge case.

Performance notes

Because every prediction (and every robustness iteration during fitting) performs an exact local regression using all training points, cost is O(n) per prediction and O(n²) per fitting pass. This is fine for the typical scatterplot-smoothing use case (up to a few thousand points) but will be slow for very large datasets — R's default surface="interpolate" exists specifically to avoid this cost via approximation, which is a possible future extension here (e.g. a kd-tree + local blending).

Files

  • rloess/loess.py — the Loess class and loess() convenience function
  • tests/test_loess.py — test suite (python tests/test_loess.py)
  • example.py — runnable example generating a comparison plot

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

rloess-0.1.0.tar.gz (12.3 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

rloess-0.1.0-py3-none-any.whl (9.6 kB view details)

Uploaded Python 3

File details

Details for the file rloess-0.1.0.tar.gz.

File metadata

  • Download URL: rloess-0.1.0.tar.gz
  • Upload date:
  • Size: 12.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.2.0 CPython/3.10.20

File hashes

Hashes for rloess-0.1.0.tar.gz
Algorithm Hash digest
SHA256 72253f1202f182d1b2d6654ecf3841c0517cd070e97878c8ae9d5729f4424ef8
MD5 66239ab15840b0acd46d67b8f575329a
BLAKE2b-256 9e7d9f5d03a90ebef6f1014c056d7a9371c2bea231aea77070d31d47c5bfe12f

See more details on using hashes here.

File details

Details for the file rloess-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: rloess-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 9.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.2.0 CPython/3.10.20

File hashes

Hashes for rloess-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 7f5d1f5f264869942140eaf92e627d3f012c069087092b5ca55179a3bcb8ae5b
MD5 23574613c37c6ed801f7dd823dc7d81b
BLAKE2b-256 009a0c0779894e8e9b110f2110e3105cf6002cf0fa8b1753a3fb4067d4611542

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page