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RNA contamination detector

Project description Documentation Status

RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page.


  • Python 3.5+
  • click
  • scikit-learn
  • pysam
  • matplotlib



$ pip install rna-cd


$ conda install -c bioconda rna-cd



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