Skip to main content

RNA contamination detector

Project description

https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat) https://travis-ci.org/LUMC/rna_cd.svg?branch=master https://codecov.io/gh/LUMC/rna_cd/branch/master/graph/badge.svg Documentation Status

RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page.

Requirements

  • Python 3.5+
  • click
  • scikit-learn
  • pysam
  • matplotlib

Installation

PyPI

$ pip install rna-cd

Conda

::
$ conda install -c bioconda rna-cd

License

AGPLv3+

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

rna_cd-0.2.0.tar.gz (20.6 kB view hashes)

Uploaded source

Built Distribution

rna_cd-0.2.0-py3-none-any.whl (23.6 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page