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RNA contamination detector

Project description

https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat) https://travis-ci.org/LUMC/rna_cd.svg?branch=master https://codecov.io/gh/LUMC/rna_cd/branch/master/graph/badge.svg Documentation Status

RNA Contamination Detector

rna_cd is a python package and command line tool designed to detect RNA contamination of DNA-seq experiments.

For our complete documentation, please checkout our readthedocs page.

Requirements

  • Python 3.5+
  • click
  • scikit-learn
  • pysam
  • matplotlib

Installation

PyPI

$ pip install rna-cd

Conda

::
$ conda install -c bioconda rna-cd

License

AGPLv3+

Project details


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