Python-only mutation caller workflow for RNA-Seq BAM files
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rnaseqmut-py
Python-only port of the rnaseqmut mutation calling workflow.
- No C++ compiler needed
- Input: sorted/indexed BAM (
.bam+.bai) - Output: tab-delimited calls on STDOUT and VCF file
Install
pip install rnaseqmut-py
Usage
rnaseqmut sample.bam > sample.txt
rnaseqmut -l mutation_list.txt sample.bam > sample.2nd.txt
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