A command line tool to aggregate research output metadata from DataCite, OpenAIRE and OpenAlex based on an organisations ROR ID
Project description
Research output aggregator
[!NOTE] This script is under development
The goal of this project is to create a script to get a summarization for a research organization about the research output.
First target is to query and process information from DataCite.
The goal for this script is to create a list over research output where an organization is mentioned as:
- publisher
- creator with affiliation to the organization
- contributor with affiliation to the organization
input: ROR-id and list of variants on the organization name.
Properties to collect for each research output:
| Field | Type | Comment |
|---|---|---|
| publicationYear | integer | The year of publication, can be empty in some cases |
| resourceType | string | The resource type (free text string) |
| title | string | Title of the resource (first one if multiple) |
| publisher | string | Publisher (free text) |
| createdAt | string | Created date if availible |
| updatedAt | string | Updatade date if availible |
| isPublisher | bool | True if the the publisher match the requested organisation |
| isFunder | bool | True if the the funder match the requested organisation |
| haveCreatorAffiliation | bool | True if the the any creator match the requested organisation |
| haveContributorAffiliation | bool | True if the the any contributor match the requested organisation |
| isLatestVersion | bool | True if the DataCite metadata indicates this beeing the latest version |
| isConceptDoi | bool | True if the DataCite metadata indicates this beeing a concept DOI |
| matchPublisherRor | bool | True if the ROR id for publisher match the ROR in the provided argument |
| matchCreatorAffiliationRor | bool | True if the ROR id for a creator affiliation match the ROR in the provided argument |
| matchContributorAffiliationRor | bool | True if the ROR id for a contributor affiliation match the ROR in the provided argument |
| matchFunderRor | bool | True if the ROR id for funder match the ROR in the provided argument |
| matchPublisherName | bool | True if any of the names supplied matches the publisher name in the resource |
| matchCreatorName | bool | True if any of the names supplied matches the creator name in the resource |
| matchContributorName | bool | True if any of the names supplied matches the contributor name in the resource |
| matchFunderName | bool | True if any of the names supplied matches the funder name in the resource |
| inDataCite | bool | True if the DOI was matched in the DataCite |
| inOpenAire | bool | True if the DOI was matched in OpenAire |
| inOpenAlex | bool | True if the DOI was matched in OpenAlex |
| inCrossRef | bool | True if the DOI was matched in CrossRef |
| dataCiteClientId | string | The client id for the organisation minting the DOI |
| dataCiteClientName | string | The human readable name of the minting organisation |
| dataCiteCitationCount | integer | Citation count for the resource provided by the DataCite API |
| dataCiteReferenceCount | integer | Reference count for the resource provided by the DataCite API |
| dataCiteViewCount | integer | View count for the resource provided by the DataCite API |
| dataCiteDownloadCount | integer | Download count for the resource provided by the DataCite API |
| openAireBestAccessRight | string | Access Rights for the resource indicated indicated by the OpenAire API |
| openAireIndicatorsUsageCountsDownloads | integer | Download count for the resource indicated by the OpenAire API |
| openAireIndicatorsUsageCountsViews | integer | View count for the resource provided by the OpenAire API |
| openAireId | string | Id for the resource in OpenAire |
| openAlexId | string | Id for the resource in OpenAlex |
| openAlexCitedByCount | integer | Citation count for the resource provided by the OpenAlex API |
| openAlexReferencedWorksCount | integer | Reference count for the resource provided by the OpenAlex API |
| titleWordCount | integer | Number of words in the title (useful for sorting in some cases) |
| referencedByDoi | string |
Install
pip install .
Install dev
pip install -e .
Development stuff to do
- ROR get name variants from ROR
- CLI add options to get name list from txt
- DataCite API build query for matching publisher and affiliation
- Crossref API build query for matching publisher and affiliation
- Publish as cmd tool on PyPI
Run
List arguments:
roagg --help
Tests
Some tests are available, to run them:
python -m pytest
Some example arguments
Chalmers with ror and name list:
roagg --ror https://ror.org/040wg7k59 --name-txt tests/name-lists/chalmers.txt --output chalmers.csv
GU with ror, name list and extra name not in the text file:
roagg --name "Department of Nephrology Gothenburg" --ror https://ror.org/01tm6cn81 --name-txt tests/name-lists/gu.txt --output data/gu.csv
KTH with ror and name list:
roagg --ror https://ror.org/026vcq606 --name-txt tests/name-lists/kth.txt --output data/kth.csv
KAU with ror:
roagg --ror https://ror.org/05s754026 --output kau.csv
License
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python-publish.yml@056e4691d8e736e66c5225ea01332457fa9ca37a -
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push
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