This release is a pre-release and may not be stable for production use.
Generative Routing Pyramids
Official implementation of Unsupervised Learning of Cell Instances with Generative Routing Pyramids (arXiv).
Install
Install with pip:
pip install git+https://github.com/weigertlab/routing-pyramids.git
The visualization scripts require optional dependencies from the [analysis] extra.
Development installation requires uv:
# in cloned repository
uv sync --extra analysis
Examples
We provide example scripts for:
- training
- prediction
- visualizing pyramidal routing and feature maps
- latent analysis and instance generation
Also see the dataset documentation.
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