s3peek 0.2.0

Terminal-first S3 browser for scientists and data engineers

s3peek

Navigate S3 buckets from terminal — instant header quicklook for FITS, ASDF, Parquet, JSON files, plus one-command pre-signed URL sharing.

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Purpose

Problem: S3 CLI navigation clunky. aws s3 ls shows raw keys; inspecting FITS/ASDF requires download first; sharing files needs remembering aws s3 presign syntax and expiry flags.

Solution: s3peek — terminal-first S3 browser combining interactive bucket navigation (arrow keys, fuzzy filter) with in-place header quicklook for astronomy/data science formats, plus instant pre-signed URL generation with clipboard copy.

Who benefits: Astronomers and data engineers at IPAC, STScI, or institutions working with AWS-hosted science data (FITS, ASDF, Parquet, JSON). Zero Python import required — distributed as standalone binary or Homebrew formula.

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Architecture

┌──────────────────────────────────────────────────────────┐
│                        s3peek CLI                        │
│  ┌──────────────┐  ┌──────────────┐  ┌────────────────┐  │
│  │  TUI browser │  │  Quicklook   │  │  Presign cmd   │  │
│  │  (Textual)   │  │  engine      │  │  (boto3)       │  │
│  └──────┬───────┘  └──────┬───────┘  └───────┬────────┘  │
│         └─────────────────┴──────────────────┘           │
│                      S3 abstraction layer                 │
│                  (boto3 + s3fs + range-GET)               │
└──────────────────────────────────────────────────────────┘
         │                                    │
    AWS S3 API                         Clipboard (pyperclip)

Key design decisions:

• Range-GET for headers — FITS/Parquet headers read via HTTP Range requests (first N bytes only, configurable via max_range_get_bytes). No full download.
• ASDF/FITS dual-mode read — fast path: raw byte parse of first N KB (no heavy lib, zero overhead). Deep-inspect path (--deep): SeekableS3Stream issues Range-GETs on demand as astropy/asdf seek through the file — full multi-HDU / full ASDF tree, no full download, works on arbitrarily large files.
• SeekableS3Stream — file-like object backed by S3 Range-GETs with a 256 KB chunk cache. Passed directly to astropy.io.fits.open() / asdf.open() so libraries only fetch the bytes they actually read.
• No local state — no DB, no cache file. All navigation state in-memory per session.
• AWS credentials pass-through — standard boto3 credential chain (~/.aws, env vars, instance profile). No credential storage.

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Repository Layout

s3peek/
├── README.md                  # This file — spec + public docs
├── pyproject.toml             # Build config; entry_points for CLI
├── Makefile                   # Dev commands: lint, test, build, brew-test
├── Formula/
│   └── s3peek.rb              # Homebrew formula (auto-generated by release CI)
├── src/
│   └── s3peek/
│       ├── __init__.py
│       ├── cli.py             # Typer app: entry point, top-level commands
│       ├── browser.py         # Textual TUI: bucket/prefix navigation widget
│       ├── quicklook.py       # Format dispatch; accepts bytes or seekable stream
│       ├── streams.py         # SeekableS3Stream: Range-GET-backed file-like object
│       ├── presign.py         # Pre-signed URL generation + clipboard copy
│       ├── s3.py              # S3 abstraction: list, stat, range-GET
│       └── config.py          # Config model: defaults, env var bindings
├── tests/
│   ├── conftest.py            # moto-based S3 fixtures; sample test files
│   ├── test_quicklook.py      # Format readers against fixture files
│   ├── test_presign.py        # Pre-signed URL generation (moto)
│   ├── test_s3.py             # S3 abstraction layer (moto)
│   └── test_cli.py            # CLI smoke tests via Typer test runner
├── fixtures/
│   ├── sample.fits            # Minimal FITS with header only
│   ├── sample.asdf            # Minimal ASDF with known tree
│   ├── sample.parquet         # Minimal Parquet with schema
│   └── sample.json            # Sample JSON object
├── .github/
│   └── workflows/
│       ├── ci.yml             # Test + lint on push/PR
│       └── release.yml        # PyPI publish + Homebrew formula bump on tag
├── .env.example               # Documented env vars; never committed with values
└── CHANGELOG.md

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Prerequisites

Requirement	Version	Notes
Python	3.11+	CPython; PyPy untested
AWS credentials	any valid chain	~/.aws/credentials, env vars, or instance profile
IAM permissions	s3:ListBucket, s3:GetObject	s3:GetObjectAttributes for stat; no write permissions needed
xclip or xsel (Linux)	any	For clipboard copy; optional — URL printed to stdout if absent
macOS	12+	pbcopy built-in; no extra deps

IAM minimum policy

{
  "Version": "2012-10-17",
  "Statement": [
    {
      "Effect": "Allow",
      "Action": ["s3:ListBucket", "s3:GetObject", "s3:GetObjectAttributes"],
      "Resource": ["arn:aws:s3:::YOUR_BUCKET", "arn:aws:s3:::YOUR_BUCKET/*"]
    }
  ]
}

Pre-signed URLs: caller's identity signs URL. Recipient needs no AWS credentials. No s3:PutObject or s3:GetBucketPolicy required.

---

Quick Start

Install via Homebrew (macOS / Linux with Linuxbrew)

brew tap ejoliet/tap
brew install s3peek

Install via tarball (Linux, no Homebrew)

curl -fsSL https://github.com/ejoliet/s3peek/releases/latest/download/s3peek-linux-x86_64.tar.gz \
  | tar -xz -C ~/.local/bin
chmod +x ~/.local/bin/s3peek

Install via pip / uv

pip install s3peek
# or
uv tool install s3peek

First run

# Browse a bucket interactively
s3peek browse s3://my-bucket/

# Quicklook a file header
s3peek peek s3://my-bucket/data/obs001.fits

# Copy a pre-signed URL to clipboard (1-day default)
s3peek share s3://my-bucket/data/obs001.fits

# Pre-signed URL with custom expiry
s3peek share s3://my-bucket/data/obs001.fits --expiry 4h

# Send an S3 object to a local Firefly server
FIREFLY_URL=http://localhost:8080/firefly s3peek firefly s3://my-bucket/data/obs001.fits

---

Configuration Reference

All settings via env var or ~/.config/s3peek/config.toml.

Env var	Type	Default	Description
AWS_DEFAULT_REGION	string	unset	AWS region passed through to boto3 when config omits aws_region
FIREFLY_URL	string	unset	Firefly server URL, e.g. http://localhost:8080/firefly
FIREFLY_CHANNEL	string	unset	Firefly browser channel override
S3PEEK_CONFIG	string	unset	Path to config TOML; defaults to ~/.config/s3peek/config.toml

Run s3peek config to see the resolved config file path and all current values.

A fully commented template is at docs/config.toml.sample.

~/.config/s3peek/config.toml example:

aws_profile = "roman-dev"
aws_region = "us-east-1"
presign_expiry_seconds = 3600
# max bytes fetched for fast-path quicklook (--deep bypasses this via streaming)
max_range_get_bytes = 65536
firefly_url = "http://localhost:8080/firefly"
firefly_channel = "my-session"

---

API / Interface Contract

CLI commands

s3peek [OPTIONS] COMMAND [ARGS]

Commands:
  browse   Interactive TUI browser for a bucket or prefix
  config   Show resolved config file path and current values
  du       Summarize storage usage under an S3 prefix
  firefly  Send an S3 object to a Firefly visualization server
  ls       List objects under an S3 prefix
  peek     Print header/schema of a single S3 object to stdout
  share    Generate a pre-signed URL; copy to clipboard
  version  Print version and exit

Options:
  --install-completion  Install completion for the current shell.
  --show-completion     Show completion for the current shell, to copy it or customize the installation.
  --help                Show this message and exit.

s3peek browse

s3peek browse S3_URI

Arguments:
  S3_URI    s3://bucket[/prefix]  required

TUI keybindings:
  ↑ / ↓          Navigate list
  Enter           Descend into prefix / auto-peek object
  Backspace       Go up one prefix level
  p               Peek selected object (fast header quicklook via Range-GET)
  d               Deep-peek selected object (full header via SeekableS3Stream)
  s               Share — generate pre-signed URL, copy to clipboard
  c               Copy s3:// URI of selected object to clipboard
  f               Send to Firefly visualization server (requires firefly_url config)
  q               Quit

s3peek peek

s3peek peek S3_URI [OPTIONS]

Arguments:
  S3_URI    s3://bucket/key or local file path   required

Options:
  --output TEXT           Output format: text or json [default: text]
  --max-hdus INTEGER      Max HDUs to show [default: 1]
  --deep                  Full header extraction via astropy/asdf (S3: streams via Range-GETs, no full download)
  --max-range-bytes INT   Override max bytes for fast-path Range-GET (default: max_range_get_bytes from config)

Exit codes:
  0   success
  1   S3 access error
  2   format not supported
  3   parse error (file exists but header unreadable)

s3peek share

s3peek share S3_URI [OPTIONS]

Arguments:
  S3_URI    s3://bucket/key   required

Options:
  --expiry TEXT      Expiry: 1h, 30m, 7d [default: 1h]
  --qr               Print QR code to terminal (requires `qrcode` extra)

Output (stdout):
  Pre-signed URL as plain text; copied to clipboard when possible

s3peek du

s3peek du S3_URI [OPTIONS]

Arguments:
  S3_URI    s3://bucket[/prefix]  required

Options:
  --human-readable / --no-human-readable  Print human-readable size [default: human-readable]

s3peek firefly

s3peek firefly S3_URI [OPTIONS]

Arguments:
  S3_URI    s3://bucket/key   required

Options:
  --server TEXT       Firefly server URL; falls back to config `firefly_url` or `FIREFLY_URL`
  --channel TEXT      Browser tab channel; falls back to config `firefly_channel` or `FIREFLY_CHANNEL`
  --open-browser      Open Firefly in a browser tab
  --preview           Show metadata picker first
  --title TEXT        Display title

Example:
  FIREFLY_URL=http://localhost:8080/firefly s3peek firefly s3://bucket/data/image.fits

Quicklook output contract

Each format reader returns HeaderResult:

from dataclasses import dataclass, field
from typing import Any

@dataclass
class HeaderResult:
    format: str                        # "fits" | "asdf" | "parquet" | "json"
    s3_uri: str
    size_bytes: int | None             # None if unavailable
    headers: list[dict[str, Any]]      # one dict per HDU (FITS) or one (others)
    truncated: bool = False            # True if range-GET hit max_bytes
    error: str | None = None           # set on parse failure

FITS headers entry structure:

{
    "hdu_index": 0,
    "hdu_type": "PrimaryHDU",         # HDU type string from astropy
    "naxis": 2,
    "shape": [2048, 2048],
    "cards": {"SIMPLE": True, "BITPIX": -32, ...}
}

ASDF headers entry structure:

{
    "asdf_version": "1.6.0",
    "tree": { ... }                   # full YAML tree dict, no array data
}

Parquet headers entry structure:

{
    "num_rows": 1048576,
    "num_row_groups": 4,
    "schema": [
        {"name": "ra", "type": "DOUBLE", "nullable": False},
        ...
    ],
    "metadata": { ... }               # file-level key/value metadata
}

JSON headers entry structure:

{
    "type": "object",                  # top-level JSON type
    "keys": ["ra", "dec", "mag"],     # top-level keys if object
    "length": 3                        # array length if top-level is array
}

---

Data Model

No persistent storage. All runtime state in:

@dataclass
class SessionState:
    bucket: str
    prefix: str = ""
    history: list[str] = field(default_factory=list)   # navigation breadcrumb
    selected_key: str | None = None

Config loaded once at startup into:

class Config(BaseModel):
    aws_profile: str | None = None
    aws_region: str | None = None
    default_bucket: str | None = None
    presign_expiry_seconds: int = 3600
    max_range_get_bytes: int = 65536
    theme: str = "dark"
    firefly_url: str | None = None
    firefly_channel: str | None = None

---

Error Handling

Error class	When raised	Exit code	User message
S3AccessError	NoCredentialsError, ClientError 403	1	"AWS credentials missing or insufficient permissions"
S3KeyNotFoundError	ClientError 404	1	"Object not found: s3://..."
FormatNotSupportedError	Extension not in supported list	2	"Format not supported. Supported: fits, asdf, parquet, json"
QuicklookParseError	Header bytes unreadable	3	"Could not parse header — file may be truncated or corrupt"
PresignExpirySyntaxError	Expiry string invalid	1	"Invalid expiry format. Use: 1d, 6h, 30m"
PresignExpiryTooLongError	Expiry > 7 days	1	"Maximum expiry is 7 days (604800 seconds)"

All errors -> stderr. stdout reserved for data output only.

---

Testing

# Run full suite
make test

# With coverage report
make test-cov

# Lint only
make lint

# Single module
pytest tests/test_quicklook.py -v

Test matrix

Suite	Scope	Fixtures
test_s3.py	list, stat, range-GET	moto S3 mock; fixtures/ uploaded at setup
test_quicklook.py	all four format readers; stream input	fixtures/sample.{fits,asdf,parquet,json}
test_presign.py	URL generation, expiry parsing, clipboard skip	moto + monkeypatched pyperclip
test_cli.py	CLI smoke paths; --deep streaming, --max-range-bytes	moto + Typer CliRunner
test_streams.py	SeekableS3Stream seek/read/cache/EOF/guard	mocked S3Client.range_get
test_deep_readers.py	FITSReader/ASDFReader _read_deep with stream	BytesIO fixtures

Constraint: Tests must never hit real AWS endpoints. moto mocking mandatory.

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Deployment / Installation Targets

Homebrew (primary macOS + Linux)

Formula/s3peek.rb auto-generated by release.yml on tag push.

Manual formula update (maintainer):

make brew-bump VERSION=0.2.0 SHA256=<sha256_of_tarball>

Standalone binary (PyInstaller)

make build-binary   # outputs dist/s3peek (macOS) or dist/s3peek-linux

CI builds for macos-latest and ubuntu-latest via GitHub Actions matrix. Artifacts uploaded to GitHub Release assets.

pip / uv

pip install s3peek
uv tool install s3peek   # preferred; isolated env

Linux tarball (no package manager)

# Built by release.yml; SHA256 verified in formula
curl -fsSL https://github.com/ejoliet/s3peek/releases/latest/download/s3peek-linux-x86_64.tar.gz \
  | tar -xz -C ~/.local/bin

---

Security

• Pre-signed URLs signed with caller's temporary or long-term AWS credentials. Grant no additional IAM permissions beyond signing identity.
• Pre-signed URL expiry — --expiry accepts values like 30m, 1h, or 7d; effective maximums still depend on AWS credential/session limits.
• No credentials stored by s3peek. Tool is read-only by design (no s3:PutObject).
• Clipboard warning — share copies the pre-signed URL when system clipboard support is available, then prints the URL to stdout.
• Firefly handoff is local by default — the CLI downloads the selected S3 object to a transient local file and passes that path to Firefly. It does not expose bucket credentials or generate remote URLs for Firefly.

---

Non-Goals (v1)

• No upload or delete — read-only; no s3:PutObject, s3:DeleteObject
• No recursive download — use aws s3 sync
• No full file render — quicklook reads headers/schema only; not FITS image viewer
• No bucket creation or policy management
• No Windows support — macOS and Linux only in v1; PRs welcome
• No auth management — does not create or rotate AWS credentials
• No HiPS / MOC / VOTable quicklook — v2 candidate
• No interactive diff between two S3 keys

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Open Questions

#	Question	Blocking?	Owner
1	Should s3peek browse support paginating >10k objects with spinner, or limit to first page_size?	No — default to limit; add pagination in v2	Emmanuel
2	qrcode extra for --qr flag: include in default install or opt-in extra?	No — make it extra: pip install s3peek[qr]	Emmanuel
3	Should FITS quicklook display WCS (World Coordinate System) summary if present?	No — nice-to-have for v2	open
4	For ASDF files from Roman pipeline: should asdf-astropy be hard dep or optional?	No — optional extra: pip install s3peek[astro]	Emmanuel

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Agent Build Instructions

Authoritative build spec. Implement end-to-end using only this README — no clarifying questions needed.

Build Order

Phase	Deliverable	Done when
0	Repo scaffold + CI skeleton	make lint passes on empty project; GitHub Actions runs
1	S3 abstraction layer (s3.py)	test_s3.py passes with moto; list, stat, range-GET work
2	Quicklook engine (quicklook.py)	test_quicklook.py passes for all 4 formats against fixtures
3	Presign module (presign.py)	test_presign.py passes; clipboard copy mocked; expiry parsing correct
4	CLI commands (cli.py) — non-TUI first	test_cli.py passes for peek, share, ls, version
5	TUI browser (browser.py)	Done — s3peek browse s3://bucket/prefix/ navigates, peek/deep-peek/share/copy/firefly keybindings work; 88 tests pass
6	Build + packaging	make build-binary succeeds; brew install from local formula

File Map

File	Purpose	Key symbols
src/s3peek/config.py	Pydantic config model; env var + TOML loading	class Config(BaseModel)
src/s3peek/s3.py	S3 list, stat, range-GET via boto3	list_prefix(), stat_object(), range_get()
src/s3peek/streams.py	Seekable S3-backed file-like object	SeekableS3Stream(io.RawIOBase)
src/s3peek/quicklook.py	Format dispatch; accepts bytes or stream	quicklook(data: bytes | io.RawIOBase, ...)
src/s3peek/presign.py	URL generation + expiry parsing + clipboard	generate_presigned_url(), parse_expiry(), copy_to_clipboard()
src/s3peek/browser.py	Textual TUI app: navigation, listing, quicklook panel	S3Browser(App), Entry, ListingReady, QuicklookReady, list_dir()
src/s3peek/cli.py	Typer app; all commands	app = typer.Typer(), browse, peek, share, ls, version
tests/conftest.py	moto fixtures; fixture file upload	s3_client, populated_bucket
tests/test_s3.py	S3 layer tests	test_list_prefix, test_range_get
tests/test_quicklook.py	Format reader tests	one test per format; error path tests
tests/test_presign.py	Presign + expiry tests	test_expiry_parsing, test_url_structure
tests/test_cli.py	CLI integration tests	test_peek_fits, test_share_no_clipboard, test_ls
Makefile	Dev commands	lint, test, test-cov, build-binary, brew-bump
pyproject.toml	Build + deps + entry point	[project.scripts] s3peek = "s3peek.cli:app"
Formula/s3peek.rb	Homebrew formula	url, sha256, depends_on blocks

Constraints

• Python 3.11+ only. No match on Python < 3.10; use 3.11+ syntax freely.
• Range-GET for FITS: read first 65536 bytes (configurable via --max-bytes). Parse with astropy.io.fits.open(BytesIO(...)) + ignore_missing_end=True.
• ASDF range-GET: read first 65536 bytes; open with asdf.open(BytesIO(...), lazy_load=True, copy_arrays=False).
• Parquet range-GET: use pyarrow.parquet.ParquetFile(pa.BufferReader(bytes)) — reads footer from end; for range-GET, fetch last 65536 bytes (footer at end of file in Parquet format).
• JSON: fetch first 65536 bytes; parse with json.loads; on failure try json.JSONDecoder().raw_decode() for streaming objects.
• Pre-signed URL expiry: parse Xd/Xh/Xm → seconds. Cap at 604800 (7 days). Error on invalid format.
• Clipboard: use pyperclip; catch pyperclip.PyperclipException, fall back to stdout-only with warning.
• Tests must use moto (@mock_aws decorator). No real boto3 calls in tests.
• All public functions: typed signatures + docstrings.
• ruff + mypy must pass at zero warnings.

Acceptance Criteria

• make test passes with ≥ 80% coverage
• make lint passes (ruff check + mypy --strict)
• s3peek peek s3://test-bucket/sample.fits prints HDU table to stdout
• s3peek share s3://test-bucket/sample.fits prints valid pre-signed URL
• s3peek share s3://test-bucket/sample.fits --expiry bad exits code 1 with error on stderr
• s3peek browse s3://test-bucket/ launches TUI without crash (manual check)
• make build-binary produces standalone executable on macOS and Linux
• brew install --build-from-source Formula/s3peek.rb succeeds locally
• All Open Questions resolved or deferred to v2 in CHANGELOG

---

Next Steps

Completed

Phase	Deliverable	Status
0	Repo scaffold + CI skeleton	Done
1	S3 abstraction layer (s3.py)	Done
2	Quicklook engine (quicklook.py)	Done
3	Presign module (presign.py)	Done
4	CLI commands (cli.py)	Done
5	TUI browser (browser.py)	Done — PR #11

Upcoming

#	Feature	Notes
6	Column sorting in TUI — sort object listing by file size or last-modified date	s key conflicts; use S (capital) or dedicated sort-cycle binding. DataTable sort via sort() with key= lambda on Entry.size / Entry.last_modified. Toggle asc/desc on repeated press.
7	Filter / fuzzy search in browser	/ key → Input widget overlaid on DataTable; filter Entry.name in-memory
8	Build + packaging	make build-binary → standalone executable; Homebrew formula
9	LocalStack integration tests	Optional CI stage; moto covers unit tests

1. Set up .github/workflows/release.yml (tag → PyPI publish + binary upload + formula bump)
2. Write Formula/s3peek.rb template; validate with brew audit
3. Resolve all Open Questions; update CHANGELOG