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Safe-SequencingSystem (SafeSeqs) data processing pipeline

Project description

SafeSeqS - Safe Sequencing System

Python package for processing of SafeSeqS data ( The pipeline analyzes multiple samples in fastq sequencing files to identify mutations present in a small fraction of DNA templates.


Please see the documentation on github for complete usage details.


Use pip to install the SafeSeqS package:

$ pip install safeseqs

SafeSeqS depends on several other packages and these will be installed automatically by pip if they are not already installed.

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Files for safeseqs, version 0.91
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