Safe-SequencingSystem (SafeSeqs) data processing pipeline
Project description
SafeSeqS - Safe Sequencing System
Python package for processing of SafeSeqS data (https://www.ncbi.nlm.nih.gov/pubmed/21586637). The pipeline analyzes multiple samples in fastq sequencing files to identify mutations present in a small fraction of DNA templates.
Documentation
Please see the documentation on github for complete usage details.
Installation
Use pip to install the SafeSeqS package:
$ pip install safeseqsSafeSeqS depends on several other packages and these will be installed automatically by pip if they are not already installed.
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