sainsc
/ˈsaiəns/
"Segmentation-free Analysis of In Situ Capture data" or alternatively "Stupid Acronyms In Science"
sainsc is a segmentation-free analysis tool for spatial transcriptomics from in situ
capture technologies (but also works for imaging-based technologies). It is easily
integratable with the scverse (i.e. scanpy and squidpy)
by exporting data in AnnData or
SpatialData format.
Installation
sainsc is available on PyPI and bioconda.
# PyPI
pip install sainsc
# or conda
conda install bioconda::sainsc
For detailed installation instructions please refer to the documentation.
Documentation
For an extensive documentation of the package please refer to the ReadTheDocs page
Versioning
This project follows the SemVer guidelines for versioning.
Citations
If you are using sainsc for your research please cite
N. Müller-Bötticher, S. Tiesmeyer, R. Eils, N. Ishaque, "Sainsc: A Computational Tool for Segmentation-Free Analysis of In Situ Capture Data" Small Methods (2025) https://doi.org/10.1002/smtd.202401123
@article{sainsc2025,
author = {Müller-Bötticher, Niklas and Tiesmeyer, Sebastian and Eils, Roland and Ishaque, Naveed},
title = {Sainsc: A Computational Tool for Segmentation-Free Analysis of In Situ Capture Data},
journal = {Small Methods},
year = {2025},
volume = {9},
number = {5},
pages = {2401123},
doi = {10.1002/smtd.202401123},
}
License
This project is licensed under the MIT License - for details please refer to the LICENSE file.
1 maintainer
Metadata
1 maintainer
Release files for sainsc 0.4.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| sainsc-0.4.1.tar.gz | 42.2 kB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| sainsc-0.4.1-cp312-abi3-win_amd64.whl | CPython 3.12 | abi3 | Windows x86-64 | Details |
| sainsc-0.4.1-cp312-abi3-musllinux_1_2_x86_64.whl | CPython 3.12 | abi3 | Linux musl 1.2+ x86-64 | Details |
| sainsc-0.4.1-cp312-abi3-musllinux_1_2_aarch64.whl | CPython 3.12 | abi3 | Linux musl 1.2+ ARM64 | Details |
| sainsc-0.4.1-cp312-abi3-manylinux_2_28_x86_64.whl | CPython 3.12 | abi3 | Linux glibc 2.28+ x86-64 | Details |
| sainsc-0.4.1-cp312-abi3-manylinux_2_28_aarch64.whl | CPython 3.12 | abi3 | Linux glibc 2.28+ ARM64 | Details |
| sainsc-0.4.1-cp312-abi3-macosx_11_0_x86_64.whl | CPython 3.12 | abi3 | macOS 11.0+ x86-64 | Details |
| sainsc-0.4.1-cp312-abi3-macosx_11_0_arm64.whl | CPython 3.12 | abi3 | macOS 11.0+ ARM64 | Details |
Total release size: 38.5 MB
Release files / sainsc-0.4.1.tar.gz
| Download URL | sainsc-0.4.1.tar.gz |
|---|---|
| Size | 42.2 kB |
| Tags | Source |
|
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|---|---|
| Size | 5.1 MB |
| Tags | CPython 3.12 Windows x86-64 abi3 |
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