sairyscan 0.0.3

Airyscan multi-array detector high resolution image reconstruction

SAiryscan

SAiryscan is a python proof of concept of the algorithms developed in the publication: Optic letters

The implementation is based on PyTorch for it capabilities of using the GPU if available.

Documentation

The documentation is available here.

Quick start

The easiest way to use the code without modifications is to use de command line interface:

airyscan -i celegans.czi -r SRegisterPosition -m ISM -o celegans_ism.tiff

To build pipeline please refer to the API documentation guide

For development

Install dev dependencies

pip install -r requirements.txt

Run the tests

pytest sairyscan

Check PEP8

pylint sairyscan

Build the documentation

The documentation is written with Sphinx. To build is run the commands:

cd docs
pipenv run sphinx-build -b html ./source ./build