SAiryscan
SAiryscan is a python proof of concept of the algorithms developed in the publication: Optic letters
The implementation is based on PyTorch for it capabilities of using the GPU if available.
Documentation
The documentation is available here.
Quick start
The easiest way to use the code without modifications is to use de command line interface:
airyscan -i celegans.czi -r SRegisterPosition -m ISM -o celegans_ism.tiff
To build pipeline please refer to the API documentation guide
For development
Install dev dependencies
pip install -r requirements.txt
Run the tests
pytest sairyscan
Check PEP8
pylint sairyscan
Build the documentation
The documentation is written with Sphinx. To build is run the commands:
cd docs
pipenv run sphinx-build -b html ./source ./build
1 maintainer
Metadata
1 maintainer
Release files for sairyscan 0.0.3
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| sairyscan-0.0.3.tar.gz | 2.9 MB | Without provenance | Details for sairyscan-0.0.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| sairyscan-0.0.3-py3-none-any.whl | Python 3 | none | any | Details for sairyscan-0.0.3-py3-none-any.whl |
Total release size: 5.9 MB
Release files / sairyscan-0.0.3.tar.gz
| Download URL | sairyscan-0.0.3.tar.gz |
|---|---|
| Size | 2.9 MB |
| Tags | Source |
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Release files / sairyscan-0.0.3-py3-none-any.whl
| Download URL | sairyscan-0.0.3-py3-none-any.whl |
|---|---|
| Size | 3.0 MB |
| Tags | Python 3 |
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