sam_tags
SAM tags
Quickstart
The sam_tags decorator permits the specification of custom enumerations that adhere to the conventions described in the SAM specification.
from enum import StrEnum
from sam_tags import sam_tag
@sam_tag
class CustomTag(StrEnum):
"""Custom SAM tags."""
XF = "XF"
"""Some filter."""
vl = "vl"
"""Some value."""
The predefined standard tags are available as a built-in class.
from sam_tags import StandardTag
# read: pysam.AlignedSegment
read.get_tag(StandardTag.RX)
Docstrings on each predefined tag permit simple reference within an IDE.
Built-in classes are also available for sets of tags used in popular bioinformatics software.
from sam_tags.community import BwaTag
from sam_tags.community import CellrangerTag
1 maintainer
Metadata
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Release files for sam_tags 0.1.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| sam_tags-0.1.0.tar.gz | 15.0 kB | Without provenance | Details for sam_tags-0.1.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| sam_tags-0.1.0-py3-none-any.whl | Python 3 | none | any | Details for sam_tags-0.1.0-py3-none-any.whl |
Total release size: 30.7 kB
Security for sam_tags 0.1.0
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