sardana-nxsrecorder 3.34.0

NeXus Sardana Scan Recorder

NeXus scan recorder for Sardana which stores experimenal data in NeXus/HDF5 file with use of NeXDatas Tango Server or packages, i.e. NXSDataWriter, NXSConfigServer, NXSRecSelector.

Source code: https://github.com/nexdatas/sardana-nxs-filerecorder

Web page: https://nexdatas.github.io/sardana-nxs-filerecorder

NexDaTaS Web page: https://nexdatas.github.io

Installation

Install the dependencies:

sardana, sphinx, NXSDataWriter, NXSConfigServer, NXSRecSelector

From sources

Download the latest NeXuS Scan Recorder version from

https://github.com/nexdatas/sardana-nxs-filerecorder

Extract sources and run

$ python3 setup.py install

and add an RecorderPath property of MacroServer with its value defining the package location, e.g.

/usr/lib/python2.7/dist-packages/sardananxsrecorder

Debian packages

Debian Trixie, Bookworm, Bullseye and Ubuntu Questing, Noble Jammy packages can be found in the HDRI repository.

To install the debian packages, add the PGP repository key

$ sudo su
$ curl -s http://repos.pni-hdri.de/debian_repo.pub.gpg | gpg --no-default-keyring --keyring gnupg-ring:/etc/apt/trusted.gpg.d/debian-hdri-repo.gpg --import
$ chmod 644 /etc/apt/trusted.gpg.d/debian-hdri-repo.gpg

and then download the corresponding source list

$ cd /etc/apt/sources.list.d
$ wget http://repos.pni-hdri.de/trixie-pni-hdri.sources

Finally, for python2.7

$ apt-get update
$ apt-get install python3-sardana-nxsrecorder

and set the RecoderPath property of MacroServer with

$ apt-get install sardana-nxsrecorder

To instal other NexDaTaS packages

$ apt-get install python3-nxswriter nxsconfigserver-db python3-nxsconfigserver nxsconfigtool3 python3-nxstools nxswriter3 nxsconfigserver3

and

$ apt-get install python3-nxsrecselector nxsrecselector3 nxselector3

for Component Selector for Sardana related packages.

Setting environment

Setting Saradna

If sardana is not yet set up run

$ Pool

• enter a new instance name

• create the new instance

Then wait a while until Pool is started and in a new terminal run

$ MacroServer

• enter a new instance name

• create the new instance

• connect pool

Next, run Astor and change start-up levels: for Pool to 2, for MacroServer to 3 and restart servers.

Alternatively, terminate Pool and MacroServer in the terminals and run

$ nxsetup start Pool -l2

wait until Pool is started and run

$ nxsetup start MacroServer -l3

Additionally, one can create dummy devices by running sar_demo in

$ spock

Setting NeXus Servers

To set up NeXus Servers run

$ nxsetup set

or

$ nxsetup set NXSDataWriter
$ nxsetup set NXSConfigServer
$ nxsetup set NXSRecSelector

for specific servers.

If the RecoderPath property of MacroServer is not set one can do it by

$ nxsetup add-recorder-path /usr/lib/python2.7/dist-packages/sardananxsrecorder

where the path should point the sardananxsrecorder package.

Sardana Variables

The NeXus file recorder uses the following sardana environment variables

• ActiveMntGrp (str) - active measurement group

• ScanID (int) - the last scan identifier number, default: -1

• ScanDir (str) - the scan directory

• ScanFile (list) - a list of scan files

• NeXusSelectorDevice (str) - NXSRecSelector tango device if more installed, otherwise first one found

• NXSAppendSciCatDataset (bool) - append scan name to scicat dataset list file, default: False

• BeamtimeFilePath (str) - beamtime file path to search beamtime metadata file, default: "/gpfs/current"

• BeamtimeFilePrefix (str) - beamtime metadata file prefix, default: "beamtime-metadata-"

• BeamtimeFileExt (str) - beamtime metadata file extension, default: ".json"

• SciCatDatasetListFilePrefix (str) - scicat dataset list file prefix, default: "scicat-datasets-"

• SciCatDatasetListFileExt (str) - scicat dataset list file extension, default: ".lst"

• SciCatDatasetListFileLocal (bool) - add the hostname to the scicat dataset list file extension, default: False

• SciCatAutoGrouping (bool) - group all scans with the measurement name set to the base scan filename, default: False

• MetadataScript (str) - a python module file name containing main() which provides a dictionary with user metadata stored in the INIT mode, default: ""

• ScicatMeasurements (dict) - a dictionary of measurement names indexed by ScanDir and used by scingestor, default: {}

• CreateMeasurementFile (bool) - create a measurement file with its filename releated to ScicatMeasurements or ScanFile, default: False

• NeXusWriterProperties (dict) - a dictionary of TangoDataWriter (NXSDataWriter) properties (starting with a small letter)

• NeXusMeshScanID (int) - ScanID used for composed scans e.g. mesh scan combined from many linear scans

• NeXusWriterModes (list) - a list of strategy modes e.g. NOINIT, NOSTEP, NOFINAL, MESH, VDS separated by commas

• ScanNames (bool) - special mode of using ScanName directories i.e.

  • True: the master file in the ScanName directory,

  • False: the master file in the grouping ScanName directory (e.g. without ScanID),

  • None (or undefined): standard mode where the master files are outside the ScanName directory

• ScanNamesNoGrouping (bool) - do not perform grouping when ScanNames is False

• ScanNamesNoMetadata (bool) - do not perform master file metadata ingestion when ScanNames is False