sbol2build 0.0b3

SBOL2Build: python package for construction of SBOL objects during build planning

BuildPlanner

SBOL2Build is a Python library for assisting in the planning, documentation, and distribution of DNA assembly plans using the Synthetic Biology Open Language 2.3 data standard.

It was developed to support build functionality and workflows in SynBioSuite, based off the SBOL Best Practices.

Installing SBOL2Build:

pip install sbol2build

Documentation

Please visit the documentation with API reference and tutorials at Read the Docs: sbol2build.rtfd.io

Environment Setup

If you are interested in contributing to BuildPlanner, please set up your local development environment with the same tools used in CI and linting.

1. Install uv

uv manages all Python dependencies (including dev tools) with a lockfile for reproducibility.

Linux/Bash

curl -LsSf https://astral.sh/uv/install.sh | sh

Mac OSX with Homebrew

brew install uv

2. Sync dependencies

uv sync --all-groups

This will create a virtual environment with the dependiencies. Activate using:

source .venv/bin/activate

3. Install pre-commit hooks

We use pre-commit to automatically run the Ruff linter before every commit. Install and enable the hooks with:

uv run pre-commit install

Running tests:

uv run python -m unittest discover -s tests