single cell annotation
Project description
scAnnot
This file will become your README and also the index of your documentation.
Install
pip install scAnnot
How to use
In command line
1. output the table of predicted lables in csv format
scAnnot /home/huang_ziliang/project/brain/data/public/human_brain_glial_Fu_2021_PCR/h5/umap.h5ad --output test.csv
2. output the anndata with predicted lables in h5ad
scAnnot /home/huang_ziliang/project/brain/data/public/human_brain_glial_Fu_2021_PCR/h5/umap.h5ad --output test.h5ad
In jupyter notebook
ad=scAnnot('/home/huang_ziliang/project/brain/data/public/human_brain_glial_Fu_2021_PCR/h5/umap.h5ad')
#show umap from the latent space
ad=scAnnot('/home/huang_ziliang/project/brain/data/public/human_brain_glial_Fu_2021_PCR/h5/umap.h5ad',show=True)
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Source Distribution
scAnnot-0.0.1.tar.gz
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