An adapted version of the Scanorama package by Brian Hie, Bryan Bryson, and Bonnie Berger for application to CytoTRACE.
Project description
Scanorma for CytoTRACE (ScanoramaCT)
scanoramaCT.py is an adapted version of the original Scanorama code for application to CytoTRACE. The code has been modified to adjust the aligned gene count vectors using Gaussian kernel normalization. CytoTRACE is then applied to the Scanorama-adjusted gene counts and expression matrix.
scanoramaCT is now available within the CytoTRACE codebase and web framework (CytoTRACE GitHub).
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
scanoramaCT-1.1.0.tar.gz
(12.4 kB
view details)
File details
Details for the file scanoramaCT-1.1.0.tar.gz.
File metadata
- Download URL: scanoramaCT-1.1.0.tar.gz
- Upload date:
- Size: 12.4 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.2.0 pkginfo/1.6.1 requests/2.25.0 setuptools/50.3.0 requests-toolbelt/0.9.1 tqdm/4.54.1 CPython/3.8.6
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 47e5d62337cba75cbb7363e6feb3e67eb1ab564eb8b8927b5bc172292455c8a8 |
|
| MD5 | 3664a40acf3343023ea323e4d46a9649 |
|
| BLAKE2b-256 | ac7cb0dfc59909022d5fac75dfab4723149e9b70e16414a7c730fb83dcd8f106 |
