Scantool: Code Analysis MCP Server for Claude

MCP server that hands an AI agent a codebase's structure — classes, functions, call graphs, imports, hot functions, all with exact line numbers — instead of raw file dumps. Works with Claude Code, Claude Desktop, Cursor, VS Code and any Model Context Protocol client. 20+ languages via tree-sitter — and code and documents (Markdown, HTML, CSS, SQL, config) through the same lens, which the code-only tools don't do.

What that buys, measured — not claimed:

"Where is the cache invalidated?"    scantool   378 tokens / 1 call
                                     grep      9,370 tokens / 4 calls    -> 25x less

pytest skipif-caching bug            scantool   solved in 3 calls
                                     grep       gave up after 13,450 tokens

On real agent episodes, scantool agents answered with 88% fact coverage vs 73% for a grep-only agent — better-anchored answers, fewer wrong files. Honest scope: grep still wins plain literal lookups and top-level overviews. Scantool measures both axes and reports the losses too (experiments/benchmark/).

Zero infrastructure: no index to build, no API keys, no vector database, no model downloads. Point it at a directory and it scans on demand.

Quick Start

Requires uv (provides the uvx command). Install it first if you don't have it — without it, scantool will silently fail to start:

# macOS / Linux / WSL
curl -LsSf https://astral.sh/uv/install.sh | sh

Every install below has one side effect: when the server starts it also writes sct, the same reader as a shell command, into uv's tool bin directory for the agent to use. See sct in the shell; SCANTOOL_NO_CLI=1 opts out.

Claude Code

# Available in all your projects (recommended)
claude mcp add --scope user scantool -- uvx scantool

# Or just for the current project
claude mcp add scantool -- uvx scantool

Restart Claude Code and you're ready to go.

Claude Desktop

Add to config (~/Library/Application Support/Claude/claude_desktop_config.json on macOS):

{
  "mcpServers": {
    "scantool": {
      "command": "uvx",
      "args": ["scantool"]
    }
  }
}

Restart Claude Desktop after configuration.

Cursor

Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (per project):

{
  "mcpServers": {
    "scantool": {
      "command": "uvx",
      "args": ["scantool"]
    }
  }
}

Windsurf

Add to ~/.codeium/windsurf/mcp_config.json:

{
  "mcpServers": {
    "scantool": {
      "command": "uvx",
      "args": ["scantool"]
    }
  }
}

VS Code (Copilot agent mode)

Add to .vscode/mcp.json in your workspace:

{
  "servers": {
    "scantool": {
      "command": "uvx",
      "args": ["scantool"]
    }
  }
}

Cline

In the Cline panel: MCP Servers icon → Configure tab → Configure MCP Servers, then add the same mcpServers entry as above. (Cline CLI reads ~/.cline/mcp.json.)

sct in the shell

Agents read most code through their shell, not through MCP tools. So when the server starts, it writes a launcher named sct into uv's tool bin directory (uv tool dir --bin: ~/.local/bin on macOS and Linux, %USERPROFILE%\.local\bin on Windows, where it also writes sct.cmd for cmd.exe and PowerShell). The launcher runs the same tool functions the MCP server exposes, under the same interpreter. Nothing else is installed, PATH and shell profiles are never edited, and a file named sct that scantool did not write is never touched. A launcher scantool wrote earlier is kept as long as its interpreter still exists and the starting server is not newer, so two scantool installs on one machine do not take turns rewriting it.

sct <dir>                                        orientation: entry points, hot functions, map
sct scan   <path>... [--ref REF] [--budget N] [--depth quick|normal|deep]
sct scan   - [--as <path>]                       paths from stdin; with --as, stdin content scanned as <path>
sct focus  <path> <name|heading> [--ref REF]
sct focus  - --as <path> <name>                  one node from stdin content
sct search <dir> <pattern> [--ref REF] [--names] [--type TYPE]
sct diff   <refA> [<refB>] [--repo DIR] [--path PATH] [--no-merge-base]
sct surface <package-dir> [--ref REF] [--against REF]
sct overlap <base> <branch>... [--repo DIR]
sct callers <name> [--dir DIR] [--ref REF]
sct resolve <path:line | path::name> --from REF --to REF [--repo DIR]
sct --help                                       the full help; --json on scan and search, --ascii anywhere

Output is valid input. A focus answer opens with the node's address, path::Qualified.name (a-b), and sct focus path::Qualified.name is one argument that reads it again; with --ref the address carries it, path::Qualified.name@origin/main (a-b). From a scan, the file line and a structure under it compose the same address. Headings are addressed by their ID tag when they have one (notes.md::DEV-L17), else quoted (notes.md::"Quick Start"). When a budget cut something, one trailer names the call that recovers the most: next: sct focus <address>. Search leads and hits are path:line.

sct diff is the structural diff between two refs, or one ref and the working tree: per file, + added, ~ changed (signature: old → new, value: old → new, or body: N code / M doc lines), = renamed (paired by identical body; unchanged members of a renamed class follow it as a count), - removed; three or more functions with the same signature delta fold into one row; new files as skeletons. Two refs compare against their merge-base by default and say so in a note (--no-merge-base compares the tips). The coverage line counts files changed without structural rows and names the reason for each.

sct surface is the public surface of a Python package: every exported name with its signature, how it is exported (__all__, a lazy-import table, a re-export, TYPE_CHECKING) and where it is defined after following the re-exports, with members inherited from bases inside the package marked. --against REF prints the surface diff and the header states the direction.

sct overlap takes N branches against one base, each at its own merge-base: structures touched by two or more branches (as addresses), new names introduced independently by two or more branches, commits two branches share beyond the base (a stack, so their overlap is expected), and per branch whether it is already in the base and by which criterion (ancestor, patch-equivalent, tree-equal; patch-equivalence proves the branch can be deleted, not that its content is in the current tree). It ends with a merge-order hint, not a verdict.

sct callers lists the actual call sites of a function or method across a directory, each with its enclosing function and path:line, with the definitions first; mentions in docstrings, comments and strings are not calls and never appear. sct resolve translates path:line or path::name from one ref to another: the enclosing structure with its start and end at --from, and where it is at --to, renamed with an identical body, or gone with the nearest names.

--ref REF reads at a git ref (branch, tag, SHA) without a checkout: a file or one node through git show, a directory or a search through git archive into a temporary directory, with every path in the answer written the way you typed it and @REF at the end of the coverage line (in JSON, coverage.ref).

If the bin directory is not on the agent's PATH, every tool description carries the absolute fallback, "<python>" -m scantool.cli, with the interpreter the server runs under.

Opt out with SCANTOOL_NO_CLI=1 in the server's environment, for example "env": {"SCANTOOL_NO_CLI": "1"} in the mcpServers entry. Without a running server, uv tool install scantool or pipx install scantool gives sct as a regular console script.

Troubleshooting: uvx not found

uvx comes with uv, the Python package manager. Install it first:

# macOS / Linux / WSL
curl -LsSf https://astral.sh/uv/install.sh | sh

# Windows (PowerShell)
powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"

After installing uv, restart your terminal (or open a new one) so uvx is on your PATH. Then re-run the setup command above.

If uvx still isn't found after restarting the terminal, add it to your PATH manually:

# Linux / WSL - add to ~/.bashrc or ~/.zshrc:
export PATH="$HOME/.local/bin:$PATH"

# macOS - usually works out of the box, but if not:
export PATH="$HOME/.local/bin:$PATH"

Alternative: Install from source

git clone https://github.com/mariusei/file-scanner-mcp.git
cd file-scanner-mcp
uv sync

# Claude Code
claude mcp add --transport stdio scantool -- uv run --directory /path/to/file-scanner-mcp scantool

# Claude Desktop
# Use command: "uv", args: ["run", "--directory", "/path/to/file-scanner-mcp", "scantool"]

Share with your team (.mcp.json)

Add a .mcp.json file to your project root to share the config with your team:

{
  "mcpServers": {
    "scantool": {
      "command": "uvx",
      "args": ["scantool"]
    }
  }
}

Claude Code will prompt team members for approval on first use.

Features

Multi-language Support

Python, JavaScript, TypeScript, Rust, Go, C/C++, Java, PHP, C#, Ruby, Zig, Swift, SQL (PostgreSQL, MySQL, SQLite), HTML, CSS, SCSS, YAML, Markdown, Jupyter notebooks, Plain Text, Images

Structure Extraction

• Classes, methods, functions, imports
• Function signatures with type annotations
• Decorators and attributes
• Docstrings and JSDoc comments
• Precise line numbers (from-to ranges)

Analysis Tools

• preview_directory: Intelligent codebase analysis with entry points, import graph, call graph, and hot functions (5-10s)
• scan_file: Detailed file structure with signatures and metadata; focus= reads one named function/class/section verbatim with parent context
• scan_directory: Compact directory tree with inline function/class names
• search_structures: Filter by type, name pattern, decorator, or complexity
• list_directories: Directory tree (folders only)
• find_divergence: Audit a directory for peer divergence — functions that break a call pattern their siblings follow (peers calling X also call Y, this one doesn't); a review hint, not a verified bug; silent on a consistent codebase. The same section also appears inline in scan_diff (changed code) and preview_directory (deep)

Output Formats

• Tree format with box-drawing characters
• JSON format for programmatic use
• Configurable display options

Usage

preview_directory - Code analysis (primary tool)

Analyzes codebase structure including entry points, import graph, call graph, and hot functions.

preview_directory(
    directory=".",
    depth="deep",  # "quick", "normal", or "deep" (default: "deep")
    max_files=10000,  # Safety limit (default: 10000)
    max_entries=20,  # Entries per section (default: 20)
    respect_gitignore=True,  # Honor .gitignore (default: True)
)

Depth levels:

• "quick": Metadata only (0.5s) - file counts, sizes, types
• "normal": Architecture analysis (2-5s) - imports, entry points, clusters
• "deep": Full analysis (5-10s) - includes hot functions and call graph (default)

Example output (depth="deep"):

project/

--- ENTRY POINTS ---
  main.py:main() @1
  backend/application.py:Flask app @15
  frontend/index.ts:export default

--- CORE FILES (by centrality) ---
  backend/database.py: imports 0, used by 15 files
  backend/auth.py: imports 1, used by 8 files
  shared/utils.py: imports 2, used by 12 files

--- ARCHITECTURE ---
  Entry Points: 25 files
  Core Logic: 68 files
  Plugins: 15 files
  Tests: 42 files

--- HOT FUNCTIONS (most called) ---
  get_database() (function): called by 41, calls 1 @backend/database.py
  authenticate() (function): called by 23, calls 5 @backend/auth.py
  validate_input() (function): called by 15, calls 2 @shared/utils.py

Analysis: 486 files in 4.82s (layer1+layer2)

Use cases:

• First-time codebase exploration
• Understanding multi-modality projects (frontend/backend/database)
• Finding critical functions (hot spots)
• Identifying entry points

scan_file - Detailed file analysis

scan_file(
    file_path="path/to/file.py",
    focus=None,  # Read ONE node verbatim by name ("query",
    # "DatabaseManager.query", a markdown heading)
    # instead of guessing line ranges — see below
    show_signatures=True,  # Include function signatures with types
    show_decorators=True,  # Include @decorator annotations
    show_docstrings=True,  # Include first line of docstrings
    show_complexity=False,  # Show complexity metrics
    condense=True,  # Condensed skeletons (set False for verbatim lines)
    budget=None,  # Approx token cap for skeletons — least salient
    # functions degrade first, output stays predictable
    caller=None,  # Your own id; delta one-liners need it, kept per caller so other agents never see them
    include_metadata=True,  # File size/mtime, git churn, [N edits/90d] labels; False = checkout-independent output
    output_format="tree",  # "tree" or "json"
)

Example output:

example.py (1-57)
- file-info: 1.4KB modified: 2 hours ago
- imports: import statements (3-5)
- class: DatabaseManager (8-26)
    "Manages database connections and queries."
  - method: __init__ (self, connection_string: str) (11-13)
  - method: connect (self) (15-17)
      "Establish database connection."
  - method: query (self, sql: str) -> list (24-26)
      "Execute a SQL query."
      return self.cursor.execute(sql).fetchall()
- function: main () (53-57)
    "Main entry point."

Functions additionally show their implementation as a condensed method skeleton: pseudocode lines without line numbers where control flow with conditions, calls and returns are kept and trivial statements fold to … (verbatim lines always carry N | line numbers — that's how you tell them apart). Skeletons come in two tiers: the most salient functions (by entropy, uniqueness and centrality) get full depth, every other function gets a shallow depth-2 outline — measured as the best fact-coverage per token. Markers are plain ASCII because box-drawing glyphs cost 2-3 BPE tokens each. Pass condense=False to get line-numbered excerpts (top tier only) instead.

Condensation adapts to the language: imperative languages (Python, TypeScript, Go, Rust, Java, ...) get fold-by-default skeletons, declarative ones (CSS, SQL, HTML) keep their content and drop only blanks, comments and closing punctuation, and prose/config stay verbatim — where there is nothing safe to fold, the original excerpt is shown unchanged.

focus= — the read step

After a scan or search has located a node, pass focus= to read exactly that function/class/method/heading verbatim — instead of guessing a line range for Read/cat/sed:

scan_file(file_path="example.py", focus="DatabaseManager.query")

focus: DatabaseManager.query @24-26
example.py (1-57)
- module docstring @1 # Example Python file for testing the scanner.
- import statements @3
- DatabaseManager @8 # Manages database connections and queries.
  - __init__ (self, connection_string: str) @11
  - connect (self) @15 # Establish database connection.
  - disconnect (self) @19 # Close database connection.
  - query (self, sql: str) -> list @24 # Execute a SQL query.
     24 |     def query(self, sql: str) -> list:
     25 |         """Execute a SQL query."""
     26 |         return []
- UserService @29 # Handles user-related operations.
- validate_email (email: str) -> bool @48 # Validate email format.
- main () @53 # Main entry point.

The rest of the file stays as a depth-1 skeleton, so the node arrives with its parent context. Names resolve in three tiers: exact match, qualified path (ClassA.method, works for markdown headings too), then case-insensitive substring; an ambiguous name returns the qualified candidate list instead of guessing. Measured on real agent episodes (experiments/benchmark/M2C.md): equal answer quality at 75% fewer read tokens than cat/sed line-range guessing.

scan_file_content - Analyze content directly

Scan content without requiring a file path: remote files, API responses, a git blob, stdin. The same reader as scan_file, with the same budget/depth tiers and focus; only the on-disk metadata and git signals are absent.

scan_file_content(
    content="def hello(): pass\n\nclass MyClass:\n    pass",
    filename="example.py",  # Extension determines parser; the name appears in the output
    focus=None,  # One node verbatim, as in scan_file ("MyClass", "Class.method", a heading)
    budget=None,  # Approximate token cap; or depth="quick" | "normal" | "deep"
    show_signatures=True,
    show_decorators=True,
    show_docstrings=True,
    show_complexity=False,
    condense=True,
    output_format="tree",
)

scan_directory - Compact overview

Shows directory tree with inline class/function names.

scan_directory(
    directory="./src",
    pattern="**/*",  # Glob pattern
    max_files=None,  # File limit
    respect_gitignore=True,  # Honor .gitignore
    exclude_patterns=None,  # Additional exclusions
    caller=None,  # Your own id; delta aggregation is per caller
    include_metadata=True,  # Size/age/churn per file; False = checkout-independent output
    output_format="tree",  # "tree" or "json"
)

Example output:

src/ (22 files, 15 classes, 127 functions, 89 methods)
├─ languages/
│  ├─ python.py (1-329) [11.9KB, 2 hours ago] - PythonLanguage
│  ├─ typescript.py (1-505) [18.9KB, 1 day ago] - TypeScriptLanguage
│  └─ rust.py (1-481) [17.6KB, 3 days ago] - RustLanguage
├─ scanner.py (1-232) [8.8KB, 5 mins ago] - FileScanner
└─ server.py (1-735) [27.2KB, just now] - scan_file, scan_directory, ...

Pattern examples:

# Specific file types
scan_directory("./src", pattern="**/*.py")

# Multiple types
scan_directory("./src", pattern="**/*.{py,ts,js}")

# Shallow scan (1 level deep)
scan_directory(".", pattern="*/*")

# Exclude directories
scan_directory(".", exclude_patterns=["tests/**", "docs/**"])

search_structures - Find and filter

# Find test functions
search_structures(directory="./tests", type_filter="function", name_pattern="^test_")

# Find classes ending in "Manager"
search_structures(directory="./src", type_filter="class", name_pattern=".*Manager$")

# Find functions with @staticmethod
search_structures(directory="./src", has_decorator="@staticmethod")

# Find complex functions (>100 lines)
search_structures(directory="./src", type_filter="function", min_complexity=100)

list_directories - Folder structure

Shows directory tree without files.

list_directories(
    directory=".",
    max_depth=3,  # Maximum depth (default: 3)
    respect_gitignore=True,  # Honor .gitignore (default: True)
)

Example output:

/Users/user/project/
├─ src/
│  ├─ components/
│  ├─ services/
│  └─ utils/
├─ tests/
│  ├─ unit/
│  └─ integration/
└─ docs/

Output Contract

The default output format IS the API: LLM agents consume scantool output directly and uncritically, so format drift is behavior drift in the consumer (measured in experiments/benchmark/M2B.md). Two consequences:

• Defaults are the measured optimum — parameters are escape hatches. Every default (two-tier condensation, saliency selection, skeleton depth, compact vs verbatim per language) is backed by measurements in experiments/condensation/, experiments/entropy_metrics/ and experiments/benchmark/. Override them when a specific situation demands it, not as a style preference.
• The default format is frozen by golden tests (tests/test_golden.py, snapshots in tests/golden/). A deliberate format change requires a deliberate snapshot update (UPDATE_GOLDEN=1 uv run pytest tests/test_golden.py); an accidental change fails CI. Environment- dependent parts (file size/mtime, git churn, delta memory) live outside the frozen layer and are switched off with include_metadata=False. The JSON form is frozen the same way (tests/golden/*.json).
• Nothing is dropped silently. Every answer opens with a coverage line. For one file: <1 file seen, M structures shown, K elided (budget)>, and each node the budget cut to its header shows ⟨…⟩ +N (N lines, read in full with focus). For a directory (scan_directory, search_structures, sct scan <dir>, sct search): <N files seen, M structures shown, E excluded (<patterns>), U unsupported (<types>)>, naming the patterns that excluded files (defaults such as node_modules/, your .gitignore files, exclude_patterns). A .gitignore that ignores the directory you named explicitly (uv writes .venv/.gitignore containing *) is set aside and named in a note: line above the coverage line. In JSON the same facts are a coverage object next to files.
• Names are identities only when they come from the source. A node whose name scantool made up ("import statements", "paragraph (4-5)", "code block (bash)", "unordered list") carries synthetic: true in JSON and synthetic=True on StructureNode, so a consumer comparing names across files or refs never pairs two files on a label they merely share. tests/test_synthetic.py checks the flag against the source for every frozen sample. Peer divergence is a pure function of the code, so it is frozen too (tests/golden/consensus.txt, fixture in tests/golden/consensus_fixture/).

Supported Languages

All files include metadata (size, modified date, permissions) automatically.

Use Cases

Code Navigation

• Structural overview of unfamiliar codebases
• File organization understanding
• Navigation using precise line ranges

Refactoring

• Identify class and function boundaries for safe splitting
• Find implementations of specific patterns
• Locate functions above complexity thresholds

Code Review

• Generate structural diffs
• Find functions with specific decorators
• Identify test coverage gaps
• Peer divergence: spot a changed function that breaks a call pattern its siblings across the repo follow (a likely regression — adjudicate by reading)

Documentation

• Auto-generate table of contents with line numbers
• Extract API signatures
• Feed structured data to analysis tools (JSON output)

AI Code Assistance

• Primary exploration tool (replaces ls/grep/find workflows)
• Partition large files intelligently for LLM context windows
• Extract code sections with exact boundaries
• Search patterns across codebases
• Reduce token usage: get structure first, read content only when needed

Architecture

scantool/
├── server.py        # FastMCP server (stdio + HTTP entry points)
├── scanner.py       # Core scanning logic using tree-sitter
├── formatter.py     # Tree formatting with box-drawing characters
├── code_map.py      # Architecture analysis (Layer 1 + 2)
├── call_graph.py    # Hot functions, centrality analysis
├── preview.py       # Quick directory preview
└── languages/       # Unified language system (one file per language)
    ├── base.py      # BaseLanguage - all languages inherit from this
    ├── models.py    # StructureNode, CallInfo, ImportInfo, etc.
    ├── python.py    # PythonLanguage
    ├── typescript.py
    ├── rust.py
    └── ...          # 20+ languages

HTTP Transport (advanced)

For environments where stdio doesn't work, or when sharing a server across multiple clients:

# Start the HTTP server
uvx --from scantool scantool-http
# Listens on port 8080 by default (set PORT env var to change)

# Connect Claude Code to it
claude mcp add --transport http scantool http://127.0.0.1:8080/mcp

Note: The HTTP server must be started separately and kept running. For most users, the stdio transport (default) is simpler and recommended.

Testing

# Run all tests
uv run pytest

# Run specific tests
uv run pytest tests/languages/
uv run pytest tests/python/
uv run pytest tests/typescript/

# Run with coverage
uv run pytest --cov=src/scantool

# Run with verbose output
uv run pytest -v

Contributing

See CONTRIBUTING.md for details on adding language support.

License

MIT License - see LICENSE file for details.

Dependencies

• FastMCP - MCP server framework
• tree-sitter - Parsing library
• uv - Python package installer

Known Limitations

MCP Tool Response Size Limit

Claude Desktop enforces a 25,000 token limit on MCP tool responses. Claude Code has a configurable limit (set MAX_MCP_OUTPUT_TOKENS env var to adjust).

Built-in mitigations:

• scan_directory() uses compact inline format
• Respects .gitignore by default (excludes node_modules, .venv, etc.)
• Shows file metadata with relative timestamps

Manual controls:

• Use pattern to limit scope: "**/*.py" vs "*/*" (shallow)
• Use max_files to cap number of files processed
• Use exclude_patterns for additional exclusions
• Scan specific subdirectories instead of entire codebase

For large codebases:

# Scan specific areas
scan_directory("./src", pattern="**/*.py")
scan_directory("./tests", pattern="**/*.py")

Agent Delegation

When using Claude Code, asking to "explore the codebase" may delegate to the Explore agent which doesn't have access to MCP tools. Be explicit: "use scantool to scan the codebase" to ensure the MCP tool is used directly.

Support

• GitHub Issues
• GitHub Discussions