single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport
Project description
scEGOT
single cell trajectory inference framework based on Entropic Gaussian mixture Optimal Transport
Installation
$ pip install scegot
Requirements
-
Python3
-
GraphViz
Click here to learn how to install GraphViz (official documentation).
Documentation
The tutorial is available here.
Paper
Please see the following paper: Yachimura, T. et al. scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport. BMC Bioinformatics 25, 388 (2024).
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