scez – single cell, easy mode
Description
There are many tools available for single-cell RNA-seq analysis, but they often require a lot of understanding of the underlying algorithms, reading of documentation, and setting up analysis environments. This takes time and effort, and can be a barrier to entry for many projects. Single-Cell Best Practices is a great resource for learning about the best practices for single-cell analysis. scez aims to provide functionalities for single-cell analysis through definitions of analysis "tasks" and implementation of these "best practices" in a user-friendly way.
This is more a personal effort to streamline my own analysis workflows, but I hope it can be useful to others as well.
Installation
First, create a new conda environment with the provided environment.yml file:
conda env create -f https://raw.githubusercontent.com/abearab/scez/main/environment.yml
conda activate scez
Then, install scez using uv / pip:
uv pip install scez
Or, to install the latest version from the repository:
uv pip install git+https://github.com/abearab/scez.git
1 maintainer
Metadata
1 maintainer
Release files for scez 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| scez-0.2.1.tar.gz | 9.0 kB | Without provenance | Details for scez-0.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| scez-0.2.1-py3-none-any.whl | Python 3 | none | any | Details for scez-0.2.1-py3-none-any.whl |
Total release size: 18.3 kB
Release files / scez-0.2.1.tar.gz
| Download URL | scez-0.2.1.tar.gz |
|---|---|
| Size | 9.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/6.1.0 CPython/3.13.7
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Release files / scez-0.2.1-py3-none-any.whl
| Download URL | scez-0.2.1-py3-none-any.whl |
|---|---|
| Size | 9.3 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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Security for scez 0.2.1
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