scgraph-eval 0.1.0

A tool for evalauting single-cell embeddings using graph-based relations

scGraph (minimal)

A tool for analyzing single-cell data using graph-based approaches.

Installation

pip install scgraph

Usage

from scgraph import scGraph

# Initialize the graph
graph = scGraph(
    adata_path="path/to/your/data.h5ad",
    batch_key="batch",
    label_key="cell_type",
    trim_rate=0.05
)

# Run analysis
results = graph.main()
print(results)

Command Line Interface

scgraph --adata_path path/to/data.h5ad --batch_key batch --label_key cell_type

Requirements

• numpy
• pandas
• scanpy
• tqdm

License

This project is licensed under the MIT License - see the LICENSE file for details.